PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00013455-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ARR-B
Protein Properties Length: 572aa    MW: 63137.4 Da    PI: 5.5538
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00013455-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.8e-28195248155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k+r++Wt +LH++Fv av+qL G++kA+Pk+i e+m+v+gLt+e+v+SHLQkYRl
  PSME_00013455-RA 195 KTRIHWTVQLHQQFVAAVNQL-GIDKAVPKRIIEIMEVHGLTRENVASHLQKYRL 248
                       68*******************.********************************8 PP

2Response_reg80.46e-27271351109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHTTTSEEEEEESTTTHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reeepklpiivvtahgeeedaleal 90 
                       +l+vdD+pl +++l+++l++ +y +v++++  +ea+ +++e++  +Dl++ D+ mp+ dG++ll+ i  +   +lp+i+++a+ge +++ + +
  PSME_00013455-RA  27 ILVVDDDPLCLMVLERMLRQCDY-NVTTCSRVSEAISMVREQKdrFDLVMSDVYMPNEDGFKLLEFIgLTL--DLPVIMMSANGETSMVMKGI 116
                       89*********************.***************888778**********************5555..5******************* PP

                       HTTESEEEESS--HHHHHH CS
      Response_reg  91 kaGakdflsKpfdpeelvk 109
                         Ga d+l+Kp+ +eel++
  PSME_00013455-RA 117 THGACDYLVKPVRMEELRN 135
                       *****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.5E-4123159No hitNo description
SuperFamilySSF521726.4E-3723145IPR011006CheY-like superfamily
SMARTSM004488.6E-3325137IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.91426141IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.1E-2427136IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.57E-2828140No hitNo description
PROSITE profilePS5129410.18192251IPR017930Myb domain
SuperFamilySSF466891.79E-19193252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-28194253IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-24195248IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MKPRVRIAEE SRCMKQMENF SPRGMKILVV DDDPLCLMVL ERMLRQCDYN VTTCSRVSEA  60
ISMVREQKDR FDLVMSDVYM PNEDGFKLLE FIGLTLDLPV IMMSANGETS MVMKGITHGA  120
CDYLVKPVRM EELRNIWQHV VRRRGREYLR EESGDSEHET NKVVETSESS SKKRKDSQNL  180
DHSSEIIDDI SSLKKTRIHW TVQLHQQFVA AVNQLGIDKA VPKRIIEIME VHGLTRENVA  240
SHLQKYRLYL KRLSGSIPAP YPVASFQAAE GGKSGGRMHI QPPAKSGALS PVLTKGLNLG  300
FGASPNSPGS FGIGGIDQGT LKSLEQYRAY EQKRAANRAQ VLGGIGIMPS KQSSVGQLPG  360
ESKGGLHRMA SVDLSLLWKA QRDQASNQNP AGSNIVDDSA AQSFKKAVKL ENVQLEPITV  420
QPASKHSRAH SMSNVLTDFC NIDLPPTGFQ RPGTLKDINE LQPMEGISWE GSTSARGELK  480
QMEEMSWEGS TRTRGAGADA GVGVDTSDDL FDDFVEEYGI TSLSPPLAEM DEQSFAGADF  540
EGMGEDGNQD PLPIAPADIG DYLFDDFPPR SR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-19191254164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0916751e-142FJ091675.1 Pinus taeda isolate 2264 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916761e-142FJ091676.1 Pinus taeda isolate 2263 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916771e-142FJ091677.1 Pinus taeda isolate 2265 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916781e-142FJ091678.1 Pinus taeda isolate 2267 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916791e-142FJ091679.1 Pinus taeda isolate 2272 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916801e-142FJ091680.1 Pinus taeda isolate 2274 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916811e-142FJ091681.1 Pinus taeda isolate 2277 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916821e-142FJ091682.1 Pinus taeda isolate 2279 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916831e-142FJ091683.1 Pinus taeda isolate 2269 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916841e-142FJ091684.1 Pinus taeda isolate 2275 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916851e-142FJ091685.1 Pinus taeda isolate 2270 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916861e-142FJ091686.1 Pinus taeda isolate 2280 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916871e-142FJ091687.1 Pinus taeda isolate 2278 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916881e-142FJ091688.1 Pinus taeda isolate 2268 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916891e-142FJ091689.1 Pinus taeda isolate 2271 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916901e-142FJ091690.1 Pinus taeda isolate 2276 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916911e-142FJ091691.1 Pinus taeda isolate 2266 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916921e-142FJ091692.1 Pinus taeda isolate 2273 anonymous locus 2_2337_01 genomic sequence.
GenBankJQ2624901e-142JQ262490.1 Pinus radiata isolate 2281 hypothetical protein (2_2337_01) gene, 3' UTR.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388632.11e-121two-component response regulator ORR21-like isoform X1
SwissprotB8B3I41e-92ORR22_ORYSI; Two-component response regulator ORR22
SwissprotQ5SML51e-92ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A0D6R6V80.0A0A0D6R6V8_ARACU; Two-component response regulator
STRINGPP1S31_291V6.11e-121(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-84response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]