PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00013455-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | ARR-B | ||||||||
Protein Properties | Length: 572aa MW: 63137.4 Da PI: 5.5538 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.9 | 4.8e-28 | 195 | 248 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt +LH++Fv av+qL G++kA+Pk+i e+m+v+gLt+e+v+SHLQkYRl PSME_00013455-RA 195 KTRIHWTVQLHQQFVAAVNQL-GIDKAVPKRIIEIMEVHGLTRENVASHLQKYRL 248 68*******************.********************************8 PP | |||||||
2 | Response_reg | 80.4 | 6e-27 | 27 | 135 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHTTTSEEEEEESTTTHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reeepklpiivvtahgeeedaleal 90 +l+vdD+pl +++l+++l++ +y +v++++ +ea+ +++e++ +Dl++ D+ mp+ dG++ll+ i + +lp+i+++a+ge +++ + + PSME_00013455-RA 27 ILVVDDDPLCLMVLERMLRQCDY-NVTTCSRVSEAISMVREQKdrFDLVMSDVYMPNEDGFKLLEFIgLTL--DLPVIMMSANGETSMVMKGI 116 89*********************.***************888778**********************5555..5******************* PP HTTESEEEESS--HHHHHH CS Response_reg 91 kaGakdflsKpfdpeelvk 109 Ga d+l+Kp+ +eel++ PSME_00013455-RA 117 THGACDYLVKPVRMEELRN 135 *****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 3.5E-41 | 23 | 159 | No hit | No description |
SuperFamily | SSF52172 | 6.4E-37 | 23 | 145 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 8.6E-33 | 25 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.914 | 26 | 141 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.1E-24 | 27 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.57E-28 | 28 | 140 | No hit | No description |
PROSITE profile | PS51294 | 10.18 | 192 | 251 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-19 | 193 | 252 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-28 | 194 | 253 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-24 | 195 | 248 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MKPRVRIAEE SRCMKQMENF SPRGMKILVV DDDPLCLMVL ERMLRQCDYN VTTCSRVSEA 60 ISMVREQKDR FDLVMSDVYM PNEDGFKLLE FIGLTLDLPV IMMSANGETS MVMKGITHGA 120 CDYLVKPVRM EELRNIWQHV VRRRGREYLR EESGDSEHET NKVVETSESS SKKRKDSQNL 180 DHSSEIIDDI SSLKKTRIHW TVQLHQQFVA AVNQLGIDKA VPKRIIEIME VHGLTRENVA 240 SHLQKYRLYL KRLSGSIPAP YPVASFQAAE GGKSGGRMHI QPPAKSGALS PVLTKGLNLG 300 FGASPNSPGS FGIGGIDQGT LKSLEQYRAY EQKRAANRAQ VLGGIGIMPS KQSSVGQLPG 360 ESKGGLHRMA SVDLSLLWKA QRDQASNQNP AGSNIVDDSA AQSFKKAVKL ENVQLEPITV 420 QPASKHSRAH SMSNVLTDFC NIDLPPTGFQ RPGTLKDINE LQPMEGISWE GSTSARGELK 480 QMEEMSWEGS TRTRGAGADA GVGVDTSDDL FDDFVEEYGI TSLSPPLAEM DEQSFAGADF 540 EGMGEDGNQD PLPIAPADIG DYLFDDFPPR SR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-19 | 191 | 254 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ091675 | 1e-142 | FJ091675.1 Pinus taeda isolate 2264 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | FJ091676 | 1e-142 | FJ091676.1 Pinus taeda isolate 2263 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | FJ091677 | 1e-142 | FJ091677.1 Pinus taeda isolate 2265 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | FJ091678 | 1e-142 | FJ091678.1 Pinus taeda isolate 2267 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | FJ091679 | 1e-142 | FJ091679.1 Pinus taeda isolate 2272 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | FJ091680 | 1e-142 | FJ091680.1 Pinus taeda isolate 2274 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | FJ091681 | 1e-142 | FJ091681.1 Pinus taeda isolate 2277 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | FJ091682 | 1e-142 | FJ091682.1 Pinus taeda isolate 2279 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | FJ091683 | 1e-142 | FJ091683.1 Pinus taeda isolate 2269 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | FJ091684 | 1e-142 | FJ091684.1 Pinus taeda isolate 2275 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | FJ091685 | 1e-142 | FJ091685.1 Pinus taeda isolate 2270 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | FJ091686 | 1e-142 | FJ091686.1 Pinus taeda isolate 2280 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | FJ091687 | 1e-142 | FJ091687.1 Pinus taeda isolate 2278 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | FJ091688 | 1e-142 | FJ091688.1 Pinus taeda isolate 2268 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | FJ091689 | 1e-142 | FJ091689.1 Pinus taeda isolate 2271 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | FJ091690 | 1e-142 | FJ091690.1 Pinus taeda isolate 2276 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | FJ091691 | 1e-142 | FJ091691.1 Pinus taeda isolate 2266 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | FJ091692 | 1e-142 | FJ091692.1 Pinus taeda isolate 2273 anonymous locus 2_2337_01 genomic sequence. | |||
GenBank | JQ262490 | 1e-142 | JQ262490.1 Pinus radiata isolate 2281 hypothetical protein (2_2337_01) gene, 3' UTR. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024388632.1 | 1e-121 | two-component response regulator ORR21-like isoform X1 | ||||
Swissprot | B8B3I4 | 1e-92 | ORR22_ORYSI; Two-component response regulator ORR22 | ||||
Swissprot | Q5SML5 | 1e-92 | ORR22_ORYSJ; Two-component response regulator ORR22 | ||||
TrEMBL | A0A0D6R6V8 | 0.0 | A0A0D6R6V8_ARACU; Two-component response regulator | ||||
STRING | PP1S31_291V6.1 | 1e-121 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 5e-84 | response regulator 2 |
Publications ? help Back to Top | |||
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