PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00013410-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 362aa    MW: 40803.9 Da    PI: 8.1078
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00013410-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.2e-1672119148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg WT+ Ed +l+++++ +G g+W++ ++  g++R++k+c++rw++yl
  PSME_00013410-RA  72 RGTWTAKEDMILLEYIRTHGEGRWTKLSQNAGLKRCGKSCRLRWLNYL 119
                       89********************************************97 PP
2Myb_DNA-binding48.52.1e-15125170148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg  +++Ed+l+++ +++lG++ W++Ia +++ +Rt++++k++w+++l
  PSME_00013410-RA 125 RGDISPDEDDLIIRMHNLLGNR-WSLIAGRLP-NRTDNEIKNYWNSHL 170
                       67789*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.95567119IPR017930Myb domain
SuperFamilySSF466895.5E-2970166IPR009057Homeodomain-like
SMARTSM007171.0E-1471121IPR001005SANT/Myb domain
PfamPF002493.3E-1572119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2273126IPR009057Homeodomain-like
CDDcd001679.95E-1174119No hitNo description
PROSITE profilePS5129425.25120174IPR017930Myb domain
SMARTSM007171.6E-15124172IPR001005SANT/Myb domain
PfamPF002493.2E-14125170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-24127174IPR009057Homeodomain-like
CDDcd001676.45E-11129170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDDGGAREMC VQWSHEGRED VGEKAQWRHE GHWYVAGGQC GRRGGTSMGG RRWKHCTTEG  60
GEVECTKKGL NRGTWTAKED MILLEYIRTH GEGRWTKLSQ NAGLKRCGKS CRLRWLNYLR  120
PNIKRGDISP DEDDLIIRMH NLLGNRWSLI AGRLPNRTDN EIKNYWNSHL SKKLEMKESQ  180
RLKSLAMNKS QHNMQTLMTG SAVFPPLQNQ VFKPNPVKIT TGERPSEKVS PYSCNGYGGN  240
NSSDEAAIKL PDAKETRNPS KSEWCDLTVE KMIKDDVSKR IGLETADVNL VGTEVTNSSY  300
FLSSFADQQS PHSHHFVVTA LAQSLFDLNE LSSTYCNLLL CPSNYSLPQF GLDEFDTGQA  360
SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-247017425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9011e-97A0A167V901_PICAB; Transcription factor MYB30
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-54myb domain protein 5