PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00013409-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 421aa MW: 47432.9 Da PI: 8.5296 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 9e-16 | 130 | 177 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+ Ed +l+++++ +G g+W++ ++ g++R++k+c++rw++yl PSME_00013409-RA 130 RGTWTAKEDMILLEYIRTHGEGRWTKLSQNAGLKRSGKSCRLRWLNYL 177 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 9.4e-16 | 183 | 228 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg T++Ed+l+++ +++lG++ W++Ia +++ +Rt++++k++w+++l PSME_00013409-RA 183 RGDITPDEDDLIIRMHNLLGNR-WSLIAGRLP-NRTDNEIKNYWNSHL 228 6778******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.76 | 125 | 177 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.53E-29 | 128 | 224 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-15 | 129 | 179 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 130 | 177 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-22 | 131 | 184 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.28E-11 | 132 | 177 | No hit | No description |
PROSITE profile | PS51294 | 25.251 | 178 | 232 | IPR017930 | Myb domain |
SMART | SM00717 | 7.7E-16 | 182 | 230 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 183 | 228 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-25 | 185 | 232 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.38E-11 | 187 | 228 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MTICISSNGF LVSSVNYGSS TVSSKQELKA NDCNSTSLSI GKSVLTINLS LEHMKLELLI 60 SSQRFTGVSF LSWENIIVIS NIYILALPRR AISASVCSGI DHQQLWSYRK RISTNMGRIP 120 CCSTKEGLNR GTWTAKEDMI LLEYIRTHGE GRWTKLSQNA GLKRSGKSCR LRWLNYLRPD 180 IKRGDITPDE DDLIIRMHNL LGNRWSLIAG RLPNRTDNEI KNYWNSHLSK RLAMNKSQQD 240 KQILMTRSAF LSPFQNQVFK PSSVEITTAK RHSEKVRPNS CDGYGGKYHS SDEAPFKLPV 300 AKETANPSKS RWCDLVVEKM ITDDESERIA SLETADVNIV RTKVINSTYP LSSLAEQQFP 360 HPDLLAVSLA QSSLDFNELS SPYCNLLWSP SNYSLPEFGL QEFYTGQAPL TAEINGFEDI 420 C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 128 | 232 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LMJ6 | 1e-103 | B8LMJ6_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 7e-55 | myb domain protein 3 |