PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00013409-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 421aa    MW: 47432.9 Da    PI: 8.5296
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00013409-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69e-16130177148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg WT+ Ed +l+++++ +G g+W++ ++  g++R++k+c++rw++yl
  PSME_00013409-RA 130 RGTWTAKEDMILLEYIRTHGEGRWTKLSQNAGLKRSGKSCRLRWLNYL 177
                       89********************************************97 PP
2Myb_DNA-binding49.69.4e-16183228148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg  T++Ed+l+++ +++lG++ W++Ia +++ +Rt++++k++w+++l
  PSME_00013409-RA 183 RGDITPDEDDLIIRMHNLLGNR-WSLIAGRLP-NRTDNEIKNYWNSHL 228
                       6778******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.76125177IPR017930Myb domain
SuperFamilySSF466892.53E-29128224IPR009057Homeodomain-like
SMARTSM007174.4E-15129179IPR001005SANT/Myb domain
PfamPF002493.2E-15130177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-22131184IPR009057Homeodomain-like
CDDcd001672.28E-11132177No hitNo description
PROSITE profilePS5129425.251178232IPR017930Myb domain
SMARTSM007177.7E-16182230IPR001005SANT/Myb domain
PfamPF002491.8E-14183228IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-25185232IPR009057Homeodomain-like
CDDcd001671.38E-11187228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MTICISSNGF LVSSVNYGSS TVSSKQELKA NDCNSTSLSI GKSVLTINLS LEHMKLELLI  60
SSQRFTGVSF LSWENIIVIS NIYILALPRR AISASVCSGI DHQQLWSYRK RISTNMGRIP  120
CCSTKEGLNR GTWTAKEDMI LLEYIRTHGE GRWTKLSQNA GLKRSGKSCR LRWLNYLRPD  180
IKRGDITPDE DDLIIRMHNL LGNRWSLIAG RLPNRTDNEI KNYWNSHLSK RLAMNKSQQD  240
KQILMTRSAF LSPFQNQVFK PSSVEITTAK RHSEKVRPNS CDGYGGKYHS SDEAPFKLPV  300
AKETANPSKS RWCDLVVEKM ITDDESERIA SLETADVNIV RTKVINSTYP LSSLAEQQFP  360
HPDLLAVSLA QSSLDFNELS SPYCNLLWSP SNYSLPEFGL QEFYTGQAPL TAEINGFEDI  420
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-2512823225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMJ61e-103B8LMJ6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.17e-55myb domain protein 3