PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00013329-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 150aa MW: 16407.3 Da PI: 4.3107 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 46.4 | 1.1e-14 | 6 | 51 | 56 | 101 |
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +a+ ++ yeA+ar++dPvyG+v +i++lqqq+++l+aela ++++l PSME_00013329-RA 6 EAVVTISYEAHARLQDPVYGCVTHIFALQQQVASLQAELAFVQAQL 51 7999*************************************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 8.0E-12 | 6 | 48 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MPDCCEAVVT ISYEAHARLQ DPVYGCVTHI FALQQQVASL QAELAFVQAQ LVSRVSSGSA 60 SISANHPVIS SSSYSQHLQF LAHLSLSCQP IPQPYNALLS RVKEENSCGF STYMDCDFFV 120 SPSDSSSPLM EVLQRCRSLE ENEGEDNGEL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026397266.1 | 4e-21 | LOB domain-containing protein 16-like | ||||
TrEMBL | D5A9D3 | 8e-67 | D5A9D3_PICSI; Uncharacterized protein | ||||
STRING | POPTR_0002s04200.1 | 3e-19 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-19 | lateral organ boundaries-domain 29 |