PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00013164-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 214aa MW: 23728.1 Da PI: 10.0627 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.4 | 8.9e-29 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien + rqvtfskRrng+lKKA+ELSvLCdaev ++ifs++g+lye++ PSME_00013164-RA 9 KRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVGLMIFSPRGNLYEFA 58 79***********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.74 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.58E-27 | 3 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.71E-38 | 3 | 61 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MVRGKTLMKR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVGLMIFSP RGNLYEFANP 60 SEAPLAWYSR VGPSQTARRV TAGNSADNLP ETGNRRNSSK LAATRRNREY SPELAVLTSE 120 CGVEFTAFAA AGGGVHGHRW DKQLHSPLHA LGAYLNPSLF YNLDSSIKGD LEVMRGVMIC 180 IEKMFLNPTI QDKINLQRDM YKAASGMFGF SSTQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT111301 | 8e-49 | BT111301.1 Picea glauca clone GQ03235_L08 mRNA sequence. | |||
GenBank | HQ176521 | 8e-49 | HQ176521.1 Picea abies MADS-domain transcription factor dal3 variant 2 (DAL3) mRNA, complete cds, alternatively spliced. | |||
GenBank | X79281 | 8e-49 | X79281.1 P.abies dal3 mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q40767 | 6e-32 | Q40767_PICAB; DAL3 protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 7e-33 | AGAMOUS-like 14 |