PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00013026-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bZIP
Protein Properties Length: 162aa    MW: 18124.3 Da    PI: 10.6738
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00013026-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1452.4e-1483144162
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                       +ke kr +r+ +NR++A+  R+RKka++  Le++vke+e +N++L ++l++l++e   l++ 
  PSME_00013026-RA  83 DKEHKRLKRLLRNRVSAQQARERKKAYLNDLETRVKEIELKNSELEERLSTLQNENHMLRQI 144
                       5899***************************************************9988875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-1483147IPR004827Basic-leucine zipper domain
PfamPF001702.6E-1384145IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.25485148IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.2E-1687147No hitNo description
SuperFamilySSF579592.94E-1387145No hitNo description
CDDcd147041.94E-1788139No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MQDTAASTST QHQSTSEKSS SSAAPAPFRQ AKDAIESDDD IRRVPEMGGM QAGPSSCVPM  60
RLDNPQPTTG VVTHRKRGRA PADKEHKRLK RLLRNRVSAQ QARERKKAYL NDLETRVKEI  120
ELKNSELEER LSTLQNENHM LRQILKNTTM KKKGSGNSGT ET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A1e-13108147342Transcription factor HY5
2oqq_B1e-13108147342Transcription factor HY5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1127660.0BT112766.1 Picea glauca clone GQ03320_K06 mRNA sequence.
GenBankEF0846360.0EF084636.1 Picea sitchensis clone WS02719_D24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399756.11e-53PREDICTED: transcription factor HY5-like
SwissprotQ9SM501e-50HY5_SOLLC; Transcription factor HY5
TrEMBLA9NTI71e-100A9NTI7_PICSI; Uncharacterized protein
STRINGPOPTR_0018s01530.12e-52(Populus trichocarpa)
STRINGXP_010254358.12e-52(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.11e-49bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]