PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00012906-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 241aa MW: 26622.4 Da PI: 7.9219 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.8 | 1.4e-14 | 15 | 62 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqk 46 +g+WT++Ed++l + ++ +G g+W t a+ g gRt++++k +w+ PSME_00012906-RA 15 KGPWTEDEDLRLTQFIRAHGEGRWPTLAKNAGriPGRTDNEIKKYWNR 62 79********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 10 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.33E-14 | 10 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.81 | 10 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 9.2E-13 | 14 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-12 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.17E-12 | 17 | 64 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGRKPCYNAK EGINKGPWTE DEDLRLTQFI RAHGEGRWPT LAKNAGRIPG RTDNEIKKYW 60 NRRLNKKVHG NACIDQLKSV GPTEPNVKEP AVSTTPTLIA NQLGERNEVI AYCVKEELKK 120 GSTSSSCNVS GNKLPGKTLI SSMKQNPSSC NLDAGTVLTK MKLWNPVQLN LTISSSWASS 180 NFLLMDAADS IVDKRPDGYT EENVPPQSHC CMFDSVNVIC EGCIDEMYSL PFPEVIPPVP 240 I |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 2e-15 | myb domain protein 74 |