PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00012903-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 317aa    MW: 35932.5 Da    PI: 7.7945
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00012903-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26.1e-163481148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT++Ed++l + ++ +G g+W + a+  g++R++k+c++rw +yl
  PSME_00012903-RA 34 KGPWTEDEDLRLTQFIQAHGEGRWPALAKSAGLKRCGKSCRLRWMNYL 81
                      79********************************************97 PP
2Myb_DNA-binding50.16.3e-1687130146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  PSME_00012903-RA  87 RGNISPDEEDLIIRLHKLLGNR-WALIAGRIP-GRTDNEIKNYWNT 130
                       7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5812981IPR017930Myb domain
SuperFamilySSF466893.29E-2932128IPR009057Homeodomain-like
SMARTSM007171.0E-133383IPR001005SANT/Myb domain
PfamPF002499.4E-153481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-223588IPR009057Homeodomain-like
CDDcd001675.50E-113681No hitNo description
PROSITE profilePS5129425.36382136IPR017930Myb domain
SMARTSM007171.7E-1586134IPR001005SANT/Myb domain
PfamPF002491.4E-1487130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2489135IPR009057Homeodomain-like
CDDcd001671.10E-1191132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
RIFRDTYISS TPGYNYLAIM GRKPYYNAKD GLNKGPWTED EDLRLTQFIQ AHGEGRWPAL  60
AKSAGLKRCG KSCRLRWMNY LRPNLKRGNI SPDEEDLIIR LHKLLGNRWA LIAGRIPGRT  120
DNEIKNYWNT RLNKKAHANA SIGPLQSVRP TEPNVKEPAV SMTPTLNSNQ LGERDEINAY  180
RVTQEPKKRS TSSNYVESEN EVKTLISPLK LQNPLSSGSD ANTTVPPEIE FWNPLQLDFI  240
LSSSWANSNF LPIDDSSVDK PVGPHCCLFE NVNDCQPCID QMYTVPRSSS SFPEFVPTTT  300
TGIDEFADLF NFIPYPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-283213625128MYB TRANSFORMING PROTEIN
1mse_C1e-28321352104C-Myb DNA-Binding Domain
1msf_C1e-28321352104C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-54myb domain protein 5