PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00012897-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 140aa MW: 15640.4 Da PI: 4.0763 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 23.2 | 1.8e-07 | 1 | 40 | 61 | 100 |
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +vyeA r+rd v+G++gvi++lq+++++ + + +++ ++ PSME_00012897-RA 1 MVYEASERVRDNVHGCAGVIHDLQKKVAEIQLQSKMVSTQ 40 69**************************999998887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 2.0E-6 | 1 | 37 | IPR004883 | Lateral organ boundaries, LOB |
CDD | cd00427 | 3.16E-4 | 55 | 79 | No hit | No description |
Gene3D | G3DSA:1.10.287.310 | 2.7E-4 | 55 | 80 | IPR001854 | Ribosomal protein L29 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006412 | Biological Process | translation | ||||
GO:0005840 | Cellular Component | ribosome | ||||
GO:0003735 | Molecular Function | structural constituent of ribosome |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MVYEASERVR DNVHGCAGVI HDLQKKVAEI QLQSKMVSTQ LADSSSVGVL INDLEKKIAE 60 LQSQLDSTQA ELANLRLQHT NLLYSISTEG NYLESWGYSF CYEEGLDPNL YTAALQENGD 120 TLMNPTVFDN VDPTQLWEAL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-10 | LOB domain-containing protein 1 |