PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00012433-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 485aa    MW: 53687 Da    PI: 4.4829
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00012433-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.7e-36431342102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++++ ++sw++ gnsf+v+++ ef+++ Lp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll
  PSME_00012433-RA  43 FLTKTYDMVDDPSTDAVVSWNNAGNSFIVWNPPEFSQNQLPRCFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKNLL 126
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  PSME_00012433-RA 127 KNIHRRKP 134
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.26E-3539132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-6039132IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-3840132IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.1E-3143132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-184366IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-188193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-1894106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MATSGEGSSS SIFGGLVDEN SKQLPPAPPQ PMEGLQNSAI PPFLTKTYDM VDDPSTDAVV  60
SWNNAGNSFI VWNPPEFSQN QLPRCFKHNN FSSFVRQLNT YGFRKVDPDR WEFANEGFLR  120
GQKNLLKNIH RRKPVQIQQL SPSLGSCVEV GKFGLEGEVE RLKRDKNVLM LELVRLRQQQ  180
HNTESEMQAM NQRLQATEQR HQQMMSFLAK AMQNPSFLAQ LVQQKEKRQL AAARKRKRLP  240
RQQQAPEGDL GQSSEGQIIR YRPNPSDNTE SVLIDTLELG SGPKLEPPSS PLRALFSEIG  300
STGENIQESS TLAGELMAIK GIEQVIQEGV PNPVALEIPA MSHLQPPSLS ALAKGKHVES  360
CQPEDDLQGE EYLVSFGETG CSEEQNTDLI GLELDLPGDV DFCINKEEPK SVLGCEMSND  420
PFWDQLFSEN PQSIQSGADG EGDFPGTGMP GPEERPGAGE WWESEPNMND LANQMGQLAK  480
DPSNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-263813224129Heat shock factor protein 1
5d5v_B6e-263813224129Heat shock factor protein 1
5d5v_D6e-263813224129Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368496.11e-121heat stress transcription factor A-2e-like
TrEMBLA0A176VRM41e-133A0A176VRM4_MARPO; Uncharacterized protein
STRINGPP1S84_95V6.11e-120(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.15e-95heat shock transcription factor A1D