PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00012424-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 262aa MW: 30226.6 Da PI: 8.4512

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00012424-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	142.3	2.8e-44	33	167	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykveP..wdLpk........kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGf FhPtdeelv +yLk+kv+g+k+el ++i+ev i++v + L ++ +++ +w+ F++rd+ky++g+r+nrat+sgyW PSME_00012424-RA 33 LPPGFGFHPTDEELVAYYLKRKVQGHKIEL-DIIPEVIILQVSLifSYL-LypkvsdkiCIPSKDLQWHLFCPRDRKYPNGSRTNRATESGYW 123 79***********************999.889999887765211233.0233555556666888*********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+d++v s ++ ++g+kktLvf++grap ge+tdWvmheyrl PSME_00012424-RA 124 KATGRDRKVNS-QRGKIGTKKTLVFHRGRAPFGERTDWVMHEYRL 167 *******.7779*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.11E-50	27	189	IPR003441	NAC domain
PROSITE profile	PS51005	49.16	33	189	IPR003441	NAC domain
Pfam	PF02365	2.4E-27	34	167	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MKDCSNIIFL KQICSNIIFL TQISFNLMAP ISLPPGFGFH PTDEELVAYY LKRKVQGHKI 60 ELDIIPEVII LQVSLIFSYL LYPKVSDKIC IPSKDLQWHL FCPRDRKYPN GSRTNRATES 120 GYWKATGRDR KVNSQRGKIG TKKTLVFHRG RAPFGERTDW VMHEYRLDEE SQGAAGLQDS 180 FVLCRVVKKN GLETKKFSKP ETPSATFNDM TEDSNAIERW LDVLLDDPDQ NVSLTSPVES 240 ENNTKLSEMF RYYVNQDHKL LQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-45	28	190	15	169	NAC domain-containing protein 19
3swm_B	3e-45	28	190	15	169	NAC domain-containing protein 19
3swm_C	3e-45	28	190	15	169	NAC domain-containing protein 19
3swm_D	3e-45	28	190	15	169	NAC domain-containing protein 19
3swp_A	3e-45	28	190	15	169	NAC domain-containing protein 19
3swp_B	3e-45	28	190	15	169	NAC domain-containing protein 19
3swp_C	3e-45	28	190	15	169	NAC domain-containing protein 19
3swp_D	3e-45	28	190	15	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ050379	6e-50	FJ050379.1 Pinus taeda isolate 2125 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050382	6e-50	FJ050382.1 Pinus taeda isolate 2139 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050383	6e-50	FJ050383.1 Pinus taeda isolate 2130 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050385	6e-50	FJ050385.1 Pinus taeda isolate 2127 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050389	6e-50	FJ050389.1 Pinus taeda isolate 2137 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050391	6e-50	FJ050391.1 Pinus taeda isolate 2136 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050394	6e-50	FJ050394.1 Pinus taeda isolate 2135 anonymous locus 0_12960_01 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021888064.1	1e-73	NAC domain-containing protein 86-like
Swissprot	Q9FFI5	8e-66	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0C9QTT7	7e-78	A0A0C9QTT7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_10143_3084 transcribed RNA sequence
STRING	evm.model.supercontig_178.32	4e-73	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	6e-70	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]