PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00012407-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

SBP

Protein Properties

Length: 1085aa MW: 120684 Da PI: 7.941

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00012407-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	45.7	1.7e-14	166	196	48	78
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 fh l+efDe+krsCrrrLa+hn+rrrk+q+ PSME_00012407-RA 166 SFHPLQEFDEGKRSCRRRLAGHNRRRRKTQP 196 5***************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	11.357	117	194	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.1E-8	166	193	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.46E-11	166	197	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	4.8E-8	827	970	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.79E-7	828	971	No hit	No description
SuperFamily	SSF48403	7.0E-9	866	978	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	8.879	911	977	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	8.683	911	944	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1085 aa Download sequence Send to blast
MSSDFKRILR NGRRSRCNAV KYPEHQLLSG PLYEPPLAAK RCVEPADSSW TRTNWQNQQQ 60 QKSPPVYEAP KPNWNVNLWD WDSVRFIAKP ADSGNHREPS HSNIKSQTSS EILRLGSNDA 120 GSNIVNASLP DQKRKLDEAV KPFPSKDSSE NDPGNLTLKL GGSSYSFHPL QEFDEGKRSC 180 RRRLAGHNRR RRKTQPEDTL PRGLLAVSQE NGSLGNLDIV SLVSILSRFK ANNNSMEKPI 240 GQSSLDENQV VQLLNKMNSS LPSSQKVAAP SQGFDLNIAQ SIQSPRSDIP KASSNSSAGL 300 TAELVAILSA LTGPSHDALA LLRNSLATNL NASLKPQHQT LLPSAPPAAA QKPQERDIQN 360 HKINFTLDAG ANNRKINSSA QDNPLPPHLP LRLFNSLEED NPPPHGFTRK YFSSDSSNPT 420 ERSPSSSPPV VQNLFPLHSG DESKENDSVS VCKEDNLMPE TSPSNERCST YNISKLESKA 480 HHQNFMSRLI HQSPESRSAL VQPGYTSSSG SDQSPASSNS DSQERTGRII FKLFGQHPSN 540 FPVALRARIM EWLSHSPSEM ESYIRPGCVI LSIFVSMPSV SWDQLREDLP QRLKLLVEDS 600 RTDFWRSGRV LVQAEQRLAS SNDGKVRFCS SWRSCDAPEI YFTQPVAVVA GQETTITLRG 660 HNLTTPGTKI LCAYRGKYTS IDVLPEEKTS MSYSESILTD HRVQKFTFSG GAPNVLGRCF 720 IEVEHGFKGN CFPVIVADPT ICRELQSLEP EIENEFSNDK TCSPKVERSQ EHCQGYSQVT 780 AREEVFNFLN ELGWLFQKSS GRQVESNFVK EPFYLEFSSA RFKFLFIYAV EKNMCALLKK 840 LLDIFFEMND EQEASTQELS KSLLESNLLH RAVKRSCKQM VDLLLNYVPS SRSIDFQTKS 900 FIFPPNSTGP GGLTPLHLAA SIQNSEDLVD ALTSDPQDVG LQSWNTSLDS SGQTPHAYAL 960 ARNNHSYNRL VQRKLADKKY GQVSIAISNN EASLDEIATE VNESHTDKAV LSFQNLSQSC 1020 AQCMIISNKR VRRTSSSRGA LYRPYMHSIL AIAAVCVCVC LYFHGPPRVG SSGPFKWENV 1080 DYGPS

Sequence ? help Back to Top

Protein Sequence Length: 1085 aa Download sequence Send to blast

MSSDFKRILR NGRRSRCNAV KYPEHQLLSG PLYEPPLAAK RCVEPADSSW TRTNWQNQQQ  60
QKSPPVYEAP KPNWNVNLWD WDSVRFIAKP ADSGNHREPS HSNIKSQTSS EILRLGSNDA  120
GSNIVNASLP DQKRKLDEAV KPFPSKDSSE NDPGNLTLKL GGSSYSFHPL QEFDEGKRSC  180
RRRLAGHNRR RRKTQPEDTL PRGLLAVSQE NGSLGNLDIV SLVSILSRFK ANNNSMEKPI  240
GQSSLDENQV VQLLNKMNSS LPSSQKVAAP SQGFDLNIAQ SIQSPRSDIP KASSNSSAGL  300
TAELVAILSA LTGPSHDALA LLRNSLATNL NASLKPQHQT LLPSAPPAAA QKPQERDIQN  360
HKINFTLDAG ANNRKINSSA QDNPLPPHLP LRLFNSLEED NPPPHGFTRK YFSSDSSNPT  420
ERSPSSSPPV VQNLFPLHSG DESKENDSVS VCKEDNLMPE TSPSNERCST YNISKLESKA  480
HHQNFMSRLI HQSPESRSAL VQPGYTSSSG SDQSPASSNS DSQERTGRII FKLFGQHPSN  540
FPVALRARIM EWLSHSPSEM ESYIRPGCVI LSIFVSMPSV SWDQLREDLP QRLKLLVEDS  600
RTDFWRSGRV LVQAEQRLAS SNDGKVRFCS SWRSCDAPEI YFTQPVAVVA GQETTITLRG  660
HNLTTPGTKI LCAYRGKYTS IDVLPEEKTS MSYSESILTD HRVQKFTFSG GAPNVLGRCF  720
IEVEHGFKGN CFPVIVADPT ICRELQSLEP EIENEFSNDK TCSPKVERSQ EHCQGYSQVT  780
AREEVFNFLN ELGWLFQKSS GRQVESNFVK EPFYLEFSSA RFKFLFIYAV EKNMCALLKK  840
LLDIFFEMND EQEASTQELS KSLLESNLLH RAVKRSCKQM VDLLLNYVPS SRSIDFQTKS  900
FIFPPNSTGP GGLTPLHLAA SIQNSEDLVD ALTSDPQDVG LQSWNTSLDS SGQTPHAYAL  960
ARNNHSYNRL VQRKLADKKY GQVSIAISNN EASLDEIATE VNESHTDKAV LSFQNLSQSC  1020
AQCMIISNKR VRRTSSSRGA LYRPYMHSIL AIAAVCVCVC LYFHGPPRVG SSGPFKWENV  1080
DYGPS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0C9S2R6	0.0	A0A0C9S2R6_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_18703_5262 transcribed RNA sequence

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	1e-154	squamosa promoter binding protein-like 14