PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00012350-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 1069aa    MW: 116054 Da    PI: 5.6744
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00012350-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46.1e-1764110148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT+eEde+l +av+ + g++Wk+Ia+++   Rt+ qc +rwqk+l
  PSME_00012350-RA  64 KGGWTEEEDEILRRAVQVFNGKNWKKIAEYFT-DRTDVQCLHRWQKVL 110
                       688****************************9.************986 PP
2Myb_DNA-binding605e-19116162148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT+eEd+l+vd+v ++G++ W+ I++ ++ gR +kqc++rw+++l
  PSME_00012350-RA 116 KGPWTKEEDDLIVDLVSKYGSKKWSVISQSLP-GRIGKQCRERWHNHL 162
                       79******************************.*************97 PP
3Myb_DNA-binding582.2e-18168210145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       +++W++eE++ l++a++ +G++ W+ Ia++++ gRt++++k++w+
  PSME_00012350-RA 168 KDAWSQEEELALIRAHQIYGNK-WAEIAKYLP-GRTDNSIKNHWN 210
                       679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.47259110IPR017930Myb domain
SMARTSM007171.9E-1563112IPR001005SANT/Myb domain
PfamPF002495.6E-1564110IPR001005SANT/Myb domain
SuperFamilySSF466897.18E-1665120IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-2466127IPR009057Homeodomain-like
CDDcd001679.41E-1467110No hitNo description
PROSITE profilePS5129430.447111166IPR017930Myb domain
SuperFamilySSF466895.99E-32113209IPR009057Homeodomain-like
SMARTSM007172.3E-17115164IPR001005SANT/Myb domain
PfamPF002498.2E-18116162IPR001005SANT/Myb domain
CDDcd001672.36E-15118162No hitNo description
Gene3DG3DSA:1.10.10.606.1E-26128169IPR009057Homeodomain-like
PROSITE profilePS5129423.34167217IPR017930Myb domain
SMARTSM007172.9E-18167215IPR001005SANT/Myb domain
PfamPF002497.7E-17168211IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-23170217IPR009057Homeodomain-like
CDDcd001673.96E-14170210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1069 aa     Download sequence    Send to blast
MAGHAANSFD KRKMPIVKNN RTDCSKDKKS GASSSSLSDC SESALERLPP VQGRTSGPTR  60
RSSKGGWTEE EDEILRRAVQ VFNGKNWKKI AEYFTDRTDV QCLHRWQKVL NPELVKGPWT  120
KEEDDLIVDL VSKYGSKKWS VISQSLPGRI GKQCRERWHN HLNPEIKKDA WSQEEELALI  180
RAHQIYGNKW AEIAKYLPGR TDNSIKNHWN SSIKKKLESY MASGLSIQLP ELPTAQPTLL  240
PALSTAAETS SEVVMAGTVT EQQFVCSQES ASRVGFQSGL LEVATTSTLE HGDKNLDLKK  300
NESDRRLVDE VNDSPSPPLP LCFETDGSVC LTADGIPEFS GVGRGKAAMS VPSYQMNDFL  360
ESVVSANTFS VGSPQEVSNA GNMSNCVAST ALGYHSIAPS SDAEHKSSSL LNRYHLSSCD  420
VAMSPPNACT SAFSGSWSPL GSGAPDASLS SFVDKKQLLS SPEKPVSAID GVLLRYGTVC  480
LPSNESLELG NQDEMPRSAM LSMTADVSRK VVCEMDAGGN PGVQSENPNS ESLFYEPPRL  540
SNWDIPFVNC DLINSCGYLH QAYSPLGVRQ MIMSSVDCFS PPCNPWGYAF NEKSPESILK  600
SAAKSFTNTP SILRKRPRDA STPVDANQNE KATDRMKAHD NFITPGSLGK KYNECLESPD  660
DVSSDYCAKD GISGPGLCQS KRRYLVSPQY CLKTKHFAPV KSMERHLEYA AEATKGTDAG  720
YRGSSPSPKK NSGGLESDVR QSNRGLDPSG WKASNRECTQ RDVRDMNKID HGARIQNMQS  780
FGVLVEQNLN GQQFCPTIGD NSLKFGTPSA STVISKSYSG RSMGISGKLR VSEGDTEMRA  840
SGFASSPRNM AHKMGTTNIE SSAVIASANP LHNAFDIDWL NNIPDLDNLS IMGSASGLDK  900
GLGSPLGLKS PWSLDPSFSV QKSSADTILE EMGIFLNHED GTDDALGLIQ HLSEHAAFAY  960
LEAEEILATD TAKEPLSLTV QASPTSHDKT AEDDSSCKEN MFSVDPAFGA DNSSPSFSCP  1020
SPFSMDFAQI FNTPCRSGGF SGGAETSQSF AGNTNDFSSP SLYLRKEFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-71642176159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-71642176159MYB PROTO-ONCOGENE PROTEIN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1129460.0BT112946.1 Picea glauca clone GQ03323_C20 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.21e-96myb domain protein 3r-4