PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00012319-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 671aa MW: 77710.4 Da PI: 6.1422

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00012319-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	74.3	2.9e-23	3	109	14	128
NAM 14 lvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkkt 105 +vv+yL kk ++++l++ +i+ vd+yk++Pw+L + +e+ewyfF++ dkky++ +r+n +++ d ++++k +++ vg+kk PSME_00012319-RA 3 IVVHYLWKKEATQSLPV-FIISYVDLYKYDPWKLLAL--FREEEWYFFTPWDKKYPNWSRPNTTVD------IDDDDPITVKgGKKRVGIKKD 86 799************.67**********744..4789***************9766......788899998857778** PP NAM 106 LvfykgrapkgektdWvmheyrl 128 Lvfy g++p+g++t+W+m++y l PSME_00012319-RA 87 LVFYVGKSPNGSNTNWLMEDYLL 109 *******************76 PP
2	NAM	162.5	1.5e-50	317	444	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrF+Pt eelvv+yL kk+++++l++ ++i++vd+yk++Pw+Lp+k+ +e+ewyfF++rd+ky++g r+nra+ sgyWkatg dk+v+ PSME_00012319-RA 317 LPPGFRFSPTGEELVVHYLWKKAASQSLPV-SIIADVDLYKYDPWQLPEKALFGEEEWYFFTPRDRKYPNGLRPNRAAGSGYWKATGADKPVT 408 79**************************.89***********8888899************************************ PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k +++ vg+kk Lvfy g+ap+g+kt+W+mheyrl PSME_00012319-RA 409 DKgGKKRVGIKKALVFYVGKAPNGSKTNWLMHEYRL 444 966777**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	23.684	1	133	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-27	3	123	IPR003441	NAC domain
Pfam	PF02365	4.7E-7	3	108	IPR003441	NAC domain
SuperFamily	SSF101941	1.09E-61	312	470	IPR003441	NAC domain
PROSITE profile	PS51005	59.495	317	470	IPR003441	NAC domain
Pfam	PF02365	4.0E-25	318	444	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
GRIVVHYLWK KEATQSLPVF IISYVDLYKY DPWKLLALFR EEEWYFFTPW DKKYPNWSRP 60 NTTVDIDDDD PITVKGGKKR VGIKKDLVFY VGKSPNGSNT NWLMEDYLLV DLDDWILYNI 120 YNKTIGLEKL ALEMKDPIMY QWNPLMKRRW RINPPQIQSS IMAMKRENHI DHLCKLEPST 180 TSYNVVSLHD FSMISNIYFH NSLVTFNGST LKYLVNNTMF NTISSSLNHQ WKNYNLKNLV 240 LSLYTDSNHS KPSSYLEPIS KKGEVQSSLR LENFFDENEQ SIFKFCFEDL QNPFDYLDQI 300 TFFYSYQDYS TKADLQLPPG FRFSPTGEEL VVHYLWKKAA SQSLPVSIIA DVDLYKYDPW 360 QLPEKALFGE EEWYFFTPRD RKYPNGLRPN RAAGSGYWKA TGADKPVTDK GGKKRVGIKK 420 ALVFYVGKAP NGSKTNWLMH EYRLADLNRP ARKKGNLRLD DWVLCRVYNK KISAEKLALE 480 QKESSDDLPM ETIDEKEMEI QPTSTSIEHS GSEESKPYSD HLCKLEPSTS SYNAVPPRDF 540 SVNSNIFFQN SPATFSDSTL EAPVQNTAFN PIFSSLNHQW TNCNSTGLIS GLHTDSNRSK 600 PSSFLEPISE KGEVQSGLQQ QQSVFNFSLE DLQIPFDYSD QISFCDAYQD YSTSLSSSDY 660 LPSFHPNELF H

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

GRIVVHYLWK KEATQSLPVF IISYVDLYKY DPWKLLALFR EEEWYFFTPW DKKYPNWSRP  60
NTTVDIDDDD PITVKGGKKR VGIKKDLVFY VGKSPNGSNT NWLMEDYLLV DLDDWILYNI  120
YNKTIGLEKL ALEMKDPIMY QWNPLMKRRW RINPPQIQSS IMAMKRENHI DHLCKLEPST  180
TSYNVVSLHD FSMISNIYFH NSLVTFNGST LKYLVNNTMF NTISSSLNHQ WKNYNLKNLV  240
LSLYTDSNHS KPSSYLEPIS KKGEVQSSLR LENFFDENEQ SIFKFCFEDL QNPFDYLDQI  300
TFFYSYQDYS TKADLQLPPG FRFSPTGEEL VVHYLWKKAA SQSLPVSIIA DVDLYKYDPW  360
QLPEKALFGE EEWYFFTPRD RKYPNGLRPN RAAGSGYWKA TGADKPVTDK GGKKRVGIKK  420
ALVFYVGKAP NGSKTNWLMH EYRLADLNRP ARKKGNLRLD DWVLCRVYNK KISAEKLALE  480
QKESSDDLPM ETIDEKEMEI QPTSTSIEHS GSEESKPYSD HLCKLEPSTS SYNAVPPRDF  540
SVNSNIFFQN SPATFSDSTL EAPVQNTAFN PIFSSLNHQW TNCNSTGLIS GLHTDSNRSK  600
PSSFLEPISE KGEVQSGLQQ QQSVFNFSLE DLQIPFDYSD QISFCDAYQD YSTSLSSSDY  660
LPSFHPNELF H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-75	3	476	5	174	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D6R3P9	1e-137	A0A0D6R3P9_ARACU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-82	NAC family protein