PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00012317-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 277aa    MW: 31041.6 Da    PI: 5.0406
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00012317-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.52.8e-1534785128
               NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       atg dk++++k +++ vg+kk Lvfy g+ap+g+kt+W+mheyrl
  PSME_00012317-RA   3 ATGADKPITAKgGKKRVGIKKALVFYVGKAPNGSKTNWLMHEYRL 47 
                       89********966777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.448173IPR003441NAC domain
SuperFamilySSF1019416.02E-20373IPR003441NAC domain
PfamPF023656.6E-61647IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSATGADKPI TAKGGKKRVG IKKALVFYVG KAPNGSKTNW LMHEYRLADL NRPARKKGNL  60
RLDDWVLCRI YKKKISAEKL ALEQKENSDD LPMETIDEKE MEIQPTSTSI EHSGSEESKP  120
YSDHLCKLEP STTSYNAVPP CALFMNSNIC FQNSPASFSG STLEAPVQNT AFNPISSSLN  180
DQWTNCNSTD LISGLLTDSN RSQPLSFLKP ISEKGEVQSS FKLENLSQEQ QQSEFHFSLE  240
DIQNPFDYLD QIKFSDAYQD YSTSLSSSDY LPSFYPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-28379100171NO APICAL MERISTEM PROTEIN
1ut4_B6e-28379100171NO APICAL MERISTEM PROTEIN
1ut7_A6e-28379100171NO APICAL MERISTEM PROTEIN
1ut7_B6e-28379100171NO APICAL MERISTEM PROTEIN
3swm_A7e-28379103174NAC domain-containing protein 19
3swm_B7e-28379103174NAC domain-containing protein 19
3swm_C7e-28379103174NAC domain-containing protein 19
3swm_D7e-28379103174NAC domain-containing protein 19
3swp_A7e-28379103174NAC domain-containing protein 19
3swp_B7e-28379103174NAC domain-containing protein 19
3swp_C7e-28379103174NAC domain-containing protein 19
3swp_D7e-28379103174NAC domain-containing protein 19
4dul_A6e-28379100171NAC domain-containing protein 19
4dul_B6e-28379100171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLO650611e-126O65061_PICMA; ATAF1-like protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.16e-32NAC domain containing protein 32