PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00012282-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 331aa    MW: 37043.1 Da    PI: 9.9989
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00012282-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.81.9e-2719727153128
               NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ ewyfFs++d+ky++ +++nrat++ yWka  +d++++  + +++g+kktLvfy+grap+ge++dWvmhey l
  PSME_00012282-RA 197 STDMEWYFFSPHDRKYPNCSHTNRATEARYWKANERDRQIYF-RASTIGIKKTLVFYRGRAPQGERSDWVMHEYLL 271
                       4678**************************************.8899***************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023651.1E-1969270IPR003441NAC domain
PROSITE profilePS5100526.312132302IPR003441NAC domain
SuperFamilySSF1019411.57E-27196278IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MREVNGEGRR TIQAELSSIV GLGAASFTSI ASAAPTIMMT MTNRVAYAYF PKPSIVAHAH  60
KKPASATKKF RPTDEELISC YLKGKLSHGL EVLELKEYGI HKSSAPSKLL YGRLRIHKGT  120
GTHEGALGIT KVYVDAGKWL VEETVLVDAL SRRIPLRNLS CPALAWSGIS LVLMIGSTPM  180
VHALIGLLKL EKVFLPSTDM EWYFFSPHDR KYPNCSHTNR ATEARYWKAN ERDRQIYFRA  240
STIGIKKTLV FYRGRAPQGE RSDWVMHEYL LKENECEAGP SLQVIHGNTL TTTVIINEIH  300
PDVKEVFLIG ANSKLGRAIS LYLCKRLCIK K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-2318327148140Stress-induced transcription factor NAC1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1058272e-87BT105827.1 Picea glauca clone GQ02829_B02 mRNA sequence.
GenBankEF0848192e-87EF084819.1 Picea sitchensis clone WS02811_I19 unknown mRNA.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.14e-36NAC domain containing protein 57