PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00012248-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | bZIP | ||||||||
Protein Properties | Length: 523aa MW: 55298.7 Da PI: 9.7445 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.2 | 4.8e-15 | 408 | 451 | 5 | 48 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r+rr++kNRe+A rsR+RK+a++ eLe +v eL++eNk+L+ + PSME_00012248-RA 408 RRQRRMIKNRESAARSRARKQAYTVELEAEVTELKEENKELRRK 451 79***************************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.9E-12 | 404 | 468 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.231 | 406 | 451 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.5E-11 | 408 | 452 | No hit | No description |
Pfam | PF00170 | 7.1E-13 | 408 | 451 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.0E-14 | 408 | 453 | No hit | No description |
CDD | cd14707 | 5.52E-24 | 408 | 453 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 411 | 426 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MGSNEDSRFL GAAAAAAAAA YPVGGKMGSF SLARQASIYS LTLEEFQNSL GEPGKNFGSM 60 NMEELLKNIW TAEEGQAMAA AMGAAEGTTV GNLASQASLQ RQGSLTLPRT LSRKTVDEVW 120 RDLYRENTYG NGNGNGNGNG NANGNGNGHV NAQRQATFGE ITLEDFLVKA GVVREESTEP 180 YGRLGNDQFG GFGGNSMERN ANGLGISNAL GLGFSERGVS NGEVINNGAQ GTASISLSPS 240 NNALSNQAML DAMNLEALKS SQQQTGWLNN HYRPPIVQQQ QQQQHQQILQ HQQQQQVADA 300 AAAIYGSSVK RQGNGALMGS PLGGGLGLSP TMNGGIGNGL QGGLGTGLAC LGATALTIGA 360 VSPANQLSSD GMGTSHGDNS TLSPIPYGLD VGVRGRKRGG PVEKVVERRQ RRMIKNRESA 420 ARSRARKQAY TVELEAEVTE LKEENKELRR KQVIAANKRS QLPKGKSSCS RAQAQVHSSA 480 FNVHAVLHTV LHAVLLFQRL MFTHLWLGLH SVLHAAVHAV LHA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ052524 | 1e-109 | FJ052524.1 Pinus taeda isolate 7644 anonymous locus 0_13576_02 genomic sequence. | |||
GenBank | FJ052525 | 1e-109 | FJ052525.1 Pinus taeda isolate 7642 anonymous locus 0_13576_02 genomic sequence. | |||
GenBank | FJ052526 | 1e-109 | FJ052526.1 Pinus taeda isolate 7653 anonymous locus 0_13576_02 genomic sequence. | |||
GenBank | FJ052527 | 1e-109 | FJ052527.1 Pinus taeda isolate 7649 anonymous locus 0_13576_02 genomic sequence. | |||
GenBank | FJ052528 | 1e-109 | FJ052528.1 Pinus taeda isolate 7643 anonymous locus 0_13576_02 genomic sequence. | |||
GenBank | FJ052529 | 1e-109 | FJ052529.1 Pinus taeda isolate 7648 anonymous locus 0_13576_02 genomic sequence. | |||
GenBank | FJ052530 | 1e-109 | FJ052530.1 Pinus taeda isolate 7640 anonymous locus 0_13576_02 genomic sequence. | |||
GenBank | FJ052531 | 1e-109 | FJ052531.2 Pinus taeda isolate 7639 anonymous locus 0_13576_02 genomic sequence. | |||
GenBank | FJ052533 | 1e-109 | FJ052533.2 Pinus taeda isolate 7646 anonymous locus 0_13576_02 genomic sequence. | |||
GenBank | FJ052534 | 1e-109 | FJ052534.1 Pinus taeda isolate 7652 anonymous locus 0_13576_02 genomic sequence. | |||
GenBank | FJ052535 | 1e-109 | FJ052535.1 Pinus taeda isolate 7655 anonymous locus 0_13576_02 genomic sequence. | |||
GenBank | FJ052536 | 1e-109 | FJ052536.2 Pinus taeda isolate 7641 anonymous locus 0_13576_02 genomic sequence. | |||
GenBank | FJ052537 | 1e-109 | FJ052537.2 Pinus taeda isolate 7645 anonymous locus 0_13576_02 genomic sequence. | |||
GenBank | FJ052538 | 1e-109 | FJ052538.1 Pinus taeda isolate 7647 anonymous locus 0_13576_02 genomic sequence. | |||
GenBank | JQ261909 | 1e-109 | JQ261909.1 Pinus radiata isolate 13471 hypothetical protein (0_13576_02) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011628944.1 | 1e-99 | bZIP transcription factor TRAB1 isoform X1 | ||||
Refseq | XP_011628985.1 | 1e-100 | bZIP transcription factor TRAB1 isoform X2 | ||||
Refseq | XP_020517416.1 | 1e-99 | bZIP transcription factor TRAB1 isoform X1 | ||||
Refseq | XP_020517479.1 | 1e-99 | bZIP transcription factor TRAB1 isoform X1 | ||||
Refseq | XP_020517548.1 | 1e-100 | bZIP transcription factor TRAB1 isoform X2 | ||||
TrEMBL | A0A0D6QWI0 | 1e-177 | A0A0D6QWI0_ARACU; Uncharacterized protein | ||||
STRING | ERM93465 | 6e-99 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49720.1 | 4e-33 | abscisic acid responsive element-binding factor 1 |