PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011989-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 330aa    MW: 35566.8 Da    PI: 4.6661
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011989-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027304327123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       + C+ C++ F++   L++H    H
  PSME_00011989-RA 304 FNCHSCSRDFTTEVALNSHKAAkH 327
                       78*****************87666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.866304330IPR007087Zinc finger, C2H2
PROSITE patternPS000280306327IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
RLKPTCSLGP LSVRARQSRR VVGVEVKPGE VLACDPGDER YLHMSQAAIG DKEGAKENER  60
VSLYVHVDGK KFVLGTLSRG KCDQIGLDLV FEKDFKLSHT SQSGSSSEEE EEELPQTLTL  120
NAKQNGKPGA KPVKPESKSS VTNKAAAKGK PEVKPPAKKE EDDSDEEDDD DDDDDEDMED  180
ASESDDGDEE DDSDEESDDE DEEDEETPKP AAGKKRPMPD SVTKSPATDK KAKISTPVGG  240
QKPENVAARE YWESLILAGT DKKGGDKSKK TEHVATPYPK QGGKGPASGK NVSTPESGKK  300
SGQFNCHSCS RDFTTEVALN SHKAAKHGGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1073451e-142BT107345.1 Picea glauca clone GQ03106_A22 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LKQ71e-126B8LKQ7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-12histone deacetylase 2C