PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011889-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 621aa    MW: 68286.1 Da    PI: 4.7368
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011889-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1431.8e-44211473128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       pGfrF Pt+eelv +yLkk+++g + l+++ vi+++d+y+++Pw+Lp  +++a+ ++w+fF++r++k +  +r+nr t sg+Wkatg+d++v 
  PSME_00011889-RA  21 PGFRFYPTEEELVGFYLKKQIQGGHlLNFDIVIPTLDLYRYDPWELPgLAYDAGVRQWFFFVPRESKRS-CHRPNRLTMSGFWKATGTDRAVR 112
                       9************************5555556***************768888999********99876.69********************* PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +k+ + +g+kktLvfykg+ap g++tdW+m+eyrl
  PSME_00011889-RA 113 NKQLHCIGMKKTLVFYKGKAPCGQRTDWIMNEYRL 147
                       *9999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-4614169IPR003441NAC domain
PROSITE profilePS5100549.50219169IPR003441NAC domain
PfamPF023657.9E-2421147IPR003441NAC domain
PfamPF057704.0E-9263317IPR008656Inositol-tetrakisphosphate 1-kinase
PfamPF057703.0E-32322436IPR008656Inositol-tetrakisphosphate 1-kinase
PfamPF057703.9E-8442496IPR008656Inositol-tetrakisphosphate 1-kinase
PfamPF057707.7E-31500606IPR008656Inositol-tetrakisphosphate 1-kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032957Biological Processinositol trisphosphate metabolic process
GO:0005622Cellular Componentintracellular
GO:0000287Molecular Functionmagnesium ion binding
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0047325Molecular Functioninositol tetrakisphosphate 1-kinase activity
GO:0052725Molecular Functioninositol-1,3,4-trisphosphate 6-kinase activity
GO:0052726Molecular Functioninositol-1,3,4-trisphosphate 5-kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MDLVEQIYND GYVVGELIDL PGFRFYPTEE ELVGFYLKKQ IQGGHLLNFD IVIPTLDLYR  60
YDPWELPGLA YDAGVRQWFF FVPRESKRSC HRPNRLTMSG FWKATGTDRA VRNKQLHCIG  120
MKKTLVFYKG KAPCGQRTDW IMNEYRLPDF SSSRTKNKMD IVLCRIYRKA TFPKPMEEKT  180
KPNHVDESTG QGYEEKLSHS FTVNGSCQLS NPVPKAELCS LHYQNQEGIT SSYLIFPVVD  240
SCCDFEELLA SDVNWRFHGS LSSGGVLFKV YIVGDTIKVV RGFYLHDVDE IASLGYGFIP  300
FPWVSSASAS ADDADLDLHV VGTVGVPKQL VITGDPASIP SVVVAKPLVV DGTTESHALS  360
LAYDQVILLE LDPPLVLQEF LNHGGVLFKV YIVGDTIKVV REFSLPDVDE SAYLGYGVIP  420
FLGVSSASTL ADDADLYLHV RGGVLFKVYI VGDTIKVVCG FYLHDVDEIA SLGYGFIPFP  480
WVSSASASAD DADLDLHVGG TVGVPKQLVI TGDPASIPSG VVSKPLVVDG TTESHALSLA  540
YDQVILLEID PPLVLQEFLN HGGVLFKVYI VGDTIKVVHG FSLPDVDESA SLGYGVIPFP  600
GVSSASALFC YLVDCTLSYY I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-392117119167NO APICAL MERISTEM PROTEIN
1ut4_B2e-392117119167NO APICAL MERISTEM PROTEIN
1ut7_A2e-392117119167NO APICAL MERISTEM PROTEIN
1ut7_B2e-392117119167NO APICAL MERISTEM PROTEIN
3swm_A2e-392117122170NAC domain-containing protein 19
3swm_B2e-392117122170NAC domain-containing protein 19
3swm_C2e-392117122170NAC domain-containing protein 19
3swm_D2e-392117122170NAC domain-containing protein 19
3swp_A2e-392117122170NAC domain-containing protein 19
3swp_B2e-392117122170NAC domain-containing protein 19
3swp_C2e-392117122170NAC domain-containing protein 19
3swp_D2e-392117122170NAC domain-containing protein 19
4dul_A2e-392117119167NAC domain-containing protein 19
4dul_B2e-392117119167NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.16e-53NAC domain containing protein 35