PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00011888-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 453aa MW: 52339.4 Da PI: 5.3843

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00011888-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	140	1.4e-43	12	138	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrF P++eelv +yLkk+++g + l+++ +i+++d+y+++Pw+Lp + +a+ ++w+fF++r++k++ +r+nr t sg+Wkatg+d++v PSME_00011888-RA 12 PGFRFYPSEEELVGFYLKKQIQGGHlLNFDIIIPTLDLYRYDPWELPgLADDAGVRQWFFFVPRESKKS-CHRPNRLTMSGFWKATGTDRAVR 103 9**********************5555455***********545566889****99986.69******************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +k+ + +glkktLvfykg+ap g++tdW+m+eyrl PSME_00011888-RA 104 NKQLHCIGLKKTLVFYKGKAPCGQRTDWIMNEYRL 138 9999***************************98 PP
2	NAM	57.5	4.6e-18	323	402	29	107
NAM 29 eleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLv 107 +l++vi+++d+y+++Pw+Lp +++ + ++w fF++r++k++ +r+nr t s++Wkatg+d++v++k+ + +glkktLv PSME_00011888-RA 323 NLDTVIPTLDLYRYDPWELPGLMANdvGVRQWSFFVPRESKKS-CHRPNRLTVSSFWKATGTDRAVCNKQLHCIGLKKTLV 402 55678*************5333323788****99986.69******************999*******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-46	7	161	IPR003441	NAC domain
PROSITE profile	PS51005	49.106	10	161	IPR003441	NAC domain
Pfam	PF02365	3.5E-23	12	138	IPR003441	NAC domain
PROSITE profile	PS51005	16.554	293	440	IPR003441	NAC domain
SuperFamily	SSF101941	7.32E-14	325	402	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MDLVEQIYND LPGFRFYPSE EELVGFYLKK QIQGGHLLNF DIIIPTLDLY RYDPWELPGL 60 ADDAGVRQWF FFVPRESKKS CHRPNRLTMS GFWKATGTDR AVRNKQLHCI GLKKTLVFYK 120 GKAPCGQRTD WIMNEYRLPD FSSPSRTKNK MDIVLCRIYR KATFRKPIEE KPKPTHVEEY 180 EEKLSHSFTV LDSCQLSSPV PKTELCSLHY QNQEGVCFQN PCKTNDEESM LQCLEPIIFC 240 EDNLVLNTTE AACTPPYLEL SSFTMDLLSH EPTPNPWEDT EMDLVEEIYN DGYVEGELMD 300 LPGFRRASGI LSEETDPGGY LLNLDTVIPT LDLYRYDPWE LPGLMANDVG VRQWSFFVPR 360 ESKKSCHRPN RLTVSSFWKA TGTDRAVCNK QLHCIGLKKT LVRERAEDGL DHERVQVARF 420 QFSFQNQEQD GYCLMSDLPK GHFSEANGRT DKA

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MDLVEQIYND LPGFRFYPSE EELVGFYLKK QIQGGHLLNF DIIIPTLDLY RYDPWELPGL  60
ADDAGVRQWF FFVPRESKKS CHRPNRLTMS GFWKATGTDR AVRNKQLHCI GLKKTLVFYK  120
GKAPCGQRTD WIMNEYRLPD FSSPSRTKNK MDIVLCRIYR KATFRKPIEE KPKPTHVEEY  180
EEKLSHSFTV LDSCQLSSPV PKTELCSLHY QNQEGVCFQN PCKTNDEESM LQCLEPIIFC  240
EDNLVLNTTE AACTPPYLEL SSFTMDLLSH EPTPNPWEDT EMDLVEEIYN DGYVEGELMD  300
LPGFRRASGI LSEETDPGGY LLNLDTVIPT LDLYRYDPWE LPGLMANDVG VRQWSFFVPR  360
ESKKSCHRPN RLTVSSFWKA TGTDRAVCNK QLHCIGLKKT LVRERAEDGL DHERVQVARF  420
QFSFQNQEQD GYCLMSDLPK GHFSEANGRT DKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-37	12	163	19	167	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-37	12	163	19	167	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-37	12	163	19	167	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-37	12	163	19	167	NO APICAL MERISTEM PROTEIN
4dul_A	6e-37	12	163	19	167	NAC domain-containing protein 19
4dul_B	6e-37	12	163	19	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791987.1	1e-57	NAC domain-containing protein 22-like
Swissprot	Q10S65	9e-55	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A075M5N5	1e-105	A0A075M5N5_9SPER; NAC domain protein
STRING	XP_008791987.1	4e-57	(Phoenix dactylifera)
STRING	GRMZM2G059428_P01	9e-56	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	5e-52	NAC domain containing protein 35

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]