PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011724-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 433aa    MW: 48047.2 Da    PI: 5.1354
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011724-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.87.3e-0954109149
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpk 49 
                       lp+G++F+Ptd+el+ e+L++k+e +       ++++   ++   +i++++P++Lp 
  PSME_00011724-RA  54 LPAGVKFDPTDQELL-EHLEAKIEINGqkphplIDEFIPtLEGEdGICYTHPEKLPV 109
                       799************.99****987765565443332222444436*********94 PP
2NAM30.51e-0911014496128
               NAM  96 kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  PSME_00011724-RA 110 NGKQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 144
                       57899*********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-2248163IPR003441NAC domain
PfamPF023651.7E-955144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MVTRLSGKER SNATNSSSLI DAKLEEHQIS GSKVCPSCGH KFEFKEGIQD WPGLPAGVKF  60
DPTDQELLEH LEAKIEINGQ KPHPLIDEFI PTLEGEDGIC YTHPEKLPVN GKQKGCKKIL  120
VLYTNFGKHR KPEKTNWVMH QYHLGLQEEE KEGELVVSKV FYQTQPRQCN WERATSDLAG  180
SVITRNKNLE MSPIQPGDGS FKTYPAAAMV EQAMTDINPG PSCAYNVEGV QQINADQFPF  240
GSCPRSFDEG ISDSTGKGSE SSHCTPHSCD EHEEHEHDQQ MNAINDALKR GGFPMSSAGR  300
HDMIALHFNK RSDNAVNVDL KSSSSHHHHG GQSSNADQII CRAGESQEPD QDGDLAALDE  360
SLSRPPLLIP HEKLQQNVSG KSSSQKLSFE DMFMESTGIK EEAALTNSQD SEWLKYSSSF  420
WPESDSPENS RMI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1077630.0BT107763.1 Picea glauca clone GQ03112_H13 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.19e-58NAC domain containing protein 73