PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011607-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 290aa    MW: 32154.4 Da    PI: 8.5475
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011607-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.83e-067397226
                      -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                      +++lC  f+ +G C++G++C+F H+
  PSME_00011607-RA 73 GERLCFQFLSSGSCSRGESCNFRHD 97
                      6899999***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4467199IPR000571Zinc finger, CCCH-type
SMARTSM003560.00237198IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-47397IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-575101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-57599IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619103131IPR000571Zinc finger, CCCH-type
SMARTSM003560.39105130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-5107132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4109132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821139167IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6143167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-5144167IPR000571Zinc finger, CCCH-type
PfamPF046774.5E-33172278IPR006768Cwf19-like, C-terminal domain-1
Gene3DG3DSA:3.30.428.101.4E-7175257IPR011146HIT-like domain
SuperFamilySSF541975.44E-10176258IPR011146HIT-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MFKFIHALSP APASMMSASE LSARPPNATP SPYKVQQPPV GAKDAKKRPE ASDAQYWRYD  60
VSKKRQRGGT EDGERLCFQF LSSGSCSRGE SCNFRHDTDN KNPFSKGACF DFISKGKCER  120
GAECKFRHSS DDGGASSDLL PPGICFDFVR KGRCDKGDDC RFSHDPEAGN KRRSAVSNTH  180
QPCWFCLSSP NLDTHLVVSV GDNFYCALAK GPLVEEHVLI VPIEHLPSTL SLPSDADSEL  240
QKFKHALKKY FRKHGNAMIV FERYLNPRAA NHAHLQVQIY LALAMLANGI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399684.11e-104zinc finger CCCH domain-containing protein 59-like isoform X3
TrEMBLA0A2K1J8J01e-101A0A2K1J8J0_PHYPA; Uncharacterized protein
STRINGPP1S15_97V6.11e-101(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.19e-06C3H family protein