PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00011578-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 345aa MW: 38810.4 Da PI: 6.1855

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00011578-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.9	2.9e-51	36	165	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrFhPtdeelvv+yLkkk+++++l++ ++i+e+d+yk++Pw+Lp k++ +e+ewyfFs+rd ky++g r+nra++sgyWkatg+dk++l PSME_00011578-RA 36 LPLGFRFHPTDEELVVHYLKKKASSTPLPV-TIIAEIDLYKFDPWELPGKATFGEQEWYFFSPRDMKYPNGARPNRAATSGYWKATGTDKPIL 127 699*************************.89***********8888999********************************** PP NAM 94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++++vg+kk Lvfy g pkg kt+W+mheyrl PSME_00011578-RA 128 TStsgGTQKVGVKKALVFYGGIPPKGIKTNWIMHEYRL 165 998888899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-60	30	175	IPR003441	NAC domain
PROSITE profile	PS51005	57.712	36	215	IPR003441	NAC domain
Pfam	PF02365	3.4E-27	37	165	IPR003441	NAC domain
SuperFamily	SSF101941	2.48E-60	203	215	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MGPILSEFGQ FDFFCSNCEL MESPASFSGS HQQPQLPLGF RFHPTDEELV VHYLKKKASS 60 TPLPVTIIAE IDLYKFDPWE LPGKATFGEQ EWYFFSPRDM KYPNGARPNR AATSGYWKAT 120 GTDKPILTST SGGTQKVGVK KALVFYGGIP PKGIKTNWIM HEYRLADSGA RPSSFPNKKG 180 SLRESIHFNY NWYIDFDDTA VLQLDDWVLC RIYKKNGHSQ RVQGAERDES PSANEVMTSL 240 PNIEQQNKLQ LPKLGPFSGL LETDEAMDGN GNISRLPHQV HSSDLSHNNF SNSNDNNSDC 300 QFEVVPKQEA LAVDNENKFN SLKRTLSLAA FGDEEIHSAK RFNDM

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MGPILSEFGQ FDFFCSNCEL MESPASFSGS HQQPQLPLGF RFHPTDEELV VHYLKKKASS  60
TPLPVTIIAE IDLYKFDPWE LPGKATFGEQ EWYFFSPRDM KYPNGARPNR AATSGYWKAT  120
GTDKPILTST SGGTQKVGVK KALVFYGGIP PKGIKTNWIM HEYRLADSGA RPSSFPNKKG  180
SLRESIHFNY NWYIDFDDTA VLQLDDWVLC RIYKKNGHSQ RVQGAERDES PSANEVMTSL  240
PNIEQQNKLQ LPKLGPFSGL LETDEAMDGN GNISRLPHQV HSSDLSHNNF SNSNDNNSDC  300
QFEVVPKQEA LAVDNENKFN SLKRTLSLAA FGDEEIHSAK RFNDM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-68	33	221	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-68	33	221	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-68	33	221	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-68	33	221	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-67	33	221	17	174	NAC domain-containing protein 19
3swm_B	1e-67	33	221	17	174	NAC domain-containing protein 19
3swm_C	1e-67	33	221	17	174	NAC domain-containing protein 19
3swm_D	1e-67	33	221	17	174	NAC domain-containing protein 19
3swp_A	1e-67	33	221	17	174	NAC domain-containing protein 19
3swp_B	1e-67	33	221	17	174	NAC domain-containing protein 19
3swp_C	1e-67	33	221	17	174	NAC domain-containing protein 19
3swp_D	1e-67	33	221	17	174	NAC domain-containing protein 19
4dul_A	9e-68	33	221	14	171	NAC domain-containing protein 19
4dul_B	9e-68	33	221	14	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006841705.1	1e-105	NAC transcription factor 56
Swissprot	A2YMR0	1e-87	NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBL	W1P8R5	1e-104	W1P8R5_AMBTC; Uncharacterized protein
STRING	ERN03380	1e-105	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-88	NAC domain containing protein 25