PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00011450-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

GRAS

Protein Properties

Length: 812aa MW: 91594.2 Da PI: 5.7585

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00011450-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	376.7	2.9e-115	438	809	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l+ lL++cA+av+++d++ a+ +L++++++as +gd +qRla yf+ +L arl++s+ +l+ +l+ ts +e l+a++l+ + P+ k+ PSME_00011450-RA 438 LRALLVHCAQAVATDDTRGANDILKQIRQHASAYGDGTQRLANYFADGLVARLSGSGGRLFTTLSNGLTS---AAEILKAYQLLLVAIPYTKI 527 5789**********************************************************999998...9*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 s++++ q++l+ +e+++r+Hi+Df+i +G+QWp+L+q+LasRp+gpp+lRiTg++ p++g +e++eetg+rLa++A+++gvpfe+++ +a PSME_00011450-RA 528 SYFLTKQTVLNVTEKSNRLHIVDFGILYGFQWPSLIQSLASRPGGPPMLRITGIDFPQPGfrAAERIEETGRRLADYAKSFGVPFEYHA-IAA 619 ********************************************************99*************************.799 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e+l++eeL+++++E+l+Vn++++ +llde+v les+++ vL+ ++s++P+v+++ + +n++ F +rf eal +ysalfd++e+ +pr PSME_00011450-RA 620 KWENLDVEELSLRSDEVLVVNCMYRFNNLLDENVVLESPKNIVLNKIRSMNPRVFIHGVVNGAYNAPFFITRFREALFHYSALFDAIETIVPR 712 ***************************************************************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 e+ +r +E+ellgrei nvvaceg er+er et+++W+ r ++aGF ++pl+ + +q + ++ + + +rv+e+ ++++ gWk+r +v PSME_00011450-RA 713 EHPQRLLLEKELLGREILNVVACEGLERVERPETYKQWQVRTQRAGFVQLPLDRAIFSQTRDKVKSFFHKDFRVDEDGKWILYGWKGRISNAV 805 ****************************************************************888****************9999 PP GRAS 371 SaWr 374 Wr PSME_00011450-RA 806 ATWR 809 9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	69.394	412	789	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-112	438	809	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence Send to blast
MADEKTGIFH SNNINVVSNN IRLQRPWLQQ GTAMPATQFR GSERPWLQQG TAIPATQFRG 60 SERPAMPATQ FRGFQPPMPD EKTGIFYSNN INGVSNNIWL QRPWLQQETA MPATQFRGSL 120 SSEKSITISD EESEDTEVYS DIVLKYISDM LMDENMDEKK CMYQECSALQ ATVKPFYDIL 180 GENYPPQGLC NSNTVGENQK QSLNYYEDDV QNKIEDSSWI GDFFNSQMPG AFESPLSPNL 240 SARYSSQYSF SYSGSSTVID GLPGSPTYEP SLSESKQGLE VGELEEDIQV APKQNFEPGV 300 ENRCHFRAPK KVSDPDPDLQ LGKREDAIFG VGVAFQMNAS HSEDENGPKR QKDPHRGDLD 360 LEDRDSNKLS AVYPDNVIRN ESFDKVLLCT ENGRVFLDVQ LEILQNGVQK SVQSGFVKGL 420 QGSKARGRKQ EKRAVVDLRA LLVHCAQAVA TDDTRGANDI LKQIRQHASA YGDGTQRLAN 480 YFADGLVARL SGSGGRLFTT LSNGLTSAAE ILKAYQLLLV AIPYTKISYF LTKQTVLNVT 540 EKSNRLHIVD FGILYGFQWP SLIQSLASRP GGPPMLRITG IDFPQPGFRA AERIEETGRR 600 LADYAKSFGV PFEYHAIAAK WENLDVEELS LRSDEVLVVN CMYRFNNLLD ENVVLESPKN 660 IVLNKIRSMN PRVFIHGVVN GAYNAPFFIT RFREALFHYS ALFDAIETIV PREHPQRLLL 720 EKELLGREIL NVVACEGLER VERPETYKQW QVRTQRAGFV QLPLDRAIFS QTRDKVKSFF 780 HKDFRVDEDG KWILYGWKGR ISNAVATWRP ST

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence Send to blast

MADEKTGIFH SNNINVVSNN IRLQRPWLQQ GTAMPATQFR GSERPWLQQG TAIPATQFRG  60
SERPAMPATQ FRGFQPPMPD EKTGIFYSNN INGVSNNIWL QRPWLQQETA MPATQFRGSL  120
SSEKSITISD EESEDTEVYS DIVLKYISDM LMDENMDEKK CMYQECSALQ ATVKPFYDIL  180
GENYPPQGLC NSNTVGENQK QSLNYYEDDV QNKIEDSSWI GDFFNSQMPG AFESPLSPNL  240
SARYSSQYSF SYSGSSTVID GLPGSPTYEP SLSESKQGLE VGELEEDIQV APKQNFEPGV  300
ENRCHFRAPK KVSDPDPDLQ LGKREDAIFG VGVAFQMNAS HSEDENGPKR QKDPHRGDLD  360
LEDRDSNKLS AVYPDNVIRN ESFDKVLLCT ENGRVFLDVQ LEILQNGVQK SVQSGFVKGL  420
QGSKARGRKQ EKRAVVDLRA LLVHCAQAVA TDDTRGANDI LKQIRQHASA YGDGTQRLAN  480
YFADGLVARL SGSGGRLFTT LSNGLTSAAE ILKAYQLLLV AIPYTKISYF LTKQTVLNVT  540
EKSNRLHIVD FGILYGFQWP SLIQSLASRP GGPPMLRITG IDFPQPGFRA AERIEETGRR  600
LADYAKSFGV PFEYHAIAAK WENLDVEELS LRSDEVLVVN CMYRFNNLLD ENVVLESPKN  660
IVLNKIRSMN PRVFIHGVVN GAYNAPFFIT RFREALFHYS ALFDAIETIV PREHPQRLLL  720
EKELLGREIL NVVACEGLER VERPETYKQW QVRTQRAGFV QLPLDRAIFS QTRDKVKSFF  780
HKDFRVDEDG KWILYGWKGR ISNAVATWRP ST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-52	445	810	26	380	Protein SCARECROW
5b3h_A	1e-52	445	810	25	379	Protein SCARECROW
5b3h_D	1e-52	445	810	25	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937596.1	0.0	scarecrow-like protein 9
Refseq	XP_010937597.1	0.0	scarecrow-like protein 9
Refseq	XP_029123935.1	0.0	scarecrow-like protein 9
TrEMBL	A3E2G2	0.0	A3E2G2_PINRA; SCARECROW-like protein 1
STRING	XP_010262535.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-162	GRAS family protein