PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00011449-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

GRAS

Protein Properties

Length: 676aa MW: 75740.3 Da PI: 5.1376

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00011449-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	332.4	8.4e-102	360	676	1	319
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l+ lL++cA+av+ +d++ a+++L+++++las +gd +qRla yf+ +L arl++s+ +l+ +l++ ts +e l+a++l+ + P+ k+ PSME_00011449-RA 360 LRALLVHCAQAVAIDDTRGANEILKQIRQLASAYGDGTQRLANYFADGLVARLSGSGGKLFTTLSTGLTS---AAEILKAYQLLLVAHPYRKM 449 5789**********************************************************999999...9*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 sh+++ q++l+ +e+++r+Hi+Df+i +G+QWp+L+q La+Rp+gpp+lRiTg++ p++g +e++eetg+rLa++A+++gvpfe+++ +a+ PSME_00011449-RA 450 SHFLTYQTVLNVAEKSTRLHIVDFGILYGFQWPSLIQCLANRPGGPPMLRITGIDFPQPGfrAAERIEETGRRLADYAKSFGVPFEYHA-IAT 541 ********************************************************99*************************.7 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e+l++eeL+++++E+l+Vn++++ +llde+v l+s+r+ vL+ ++s++P+v+++ + + ++ F +rf eal +ysalfd++e+ +pr PSME_00011449-RA 542 KWENLDVEELSLRSDEVLVVNCMHRFNNLLDETVVLDSPRNIVLNKIRSMNPRVFIHGVVNGAYKAPFFITRFREALFHYSALFDAMETIVPR 634 ******************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerl 319 e +r +E+el+grei nvvaceg er+er et+++W+ r+ PSME_00011449-RA 635 ERPQRLLLEKELFGREILNVVACEGLERVERPETYKQWQVRI 676 *************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.712	334	676	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-99	360	676	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence Send to blast
MADKKTAIFY SNNMNGGSNN IGFQRPWLQQ ETAMPATQFR GSLSSEKSII TSEGESEDTE 60 VYSDIVLKYI SDMLMDENME DKKCMYQECS ALQATVKPFY DILGENYPPQ GLCNSNIVGE 120 NQNLSLNYYE EDVQNKIEDS SWIGDFFNSQ NPSGFESPLS ANISAGYSSQ YSFGSSGSST 180 VIDGLPDSPI YELSLSELFS EGKEGLGVGQ FEEAVQVAPK RNIGHSMENG WHFQAPKKES 240 DLDLQVGKRE DAIGVAFQSN AAHSDDENGP KRQKDPHRED LDLEDRQSNK LSAVYSDNVI 300 RTESFDKILL CSGNGRVFLD LQLEILQNGV QKSVQSGSVK GLQGSKARER KQGKREVVDL 360 RALLVHCAQA VAIDDTRGAN EILKQIRQLA SAYGDGTQRL ANYFADGLVA RLSGSGGKLF 420 TTLSTGLTSA AEILKAYQLL LVAHPYRKMS HFLTYQTVLN VAEKSTRLHI VDFGILYGFQ 480 WPSLIQCLAN RPGGPPMLRI TGIDFPQPGF RAAERIEETG RRLADYAKSF GVPFEYHAIA 540 TKWENLDVEE LSLRSDEVLV VNCMHRFNNL LDETVVLDSP RNIVLNKIRS MNPRVFIHGV 600 VNGAYKAPFF ITRFREALFH YSALFDAMET IVPRERPQRL LLEKELFGRE ILNVVACEGL 660 ERVERPETYK QWQVRI

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence Send to blast

MADKKTAIFY SNNMNGGSNN IGFQRPWLQQ ETAMPATQFR GSLSSEKSII TSEGESEDTE  60
VYSDIVLKYI SDMLMDENME DKKCMYQECS ALQATVKPFY DILGENYPPQ GLCNSNIVGE  120
NQNLSLNYYE EDVQNKIEDS SWIGDFFNSQ NPSGFESPLS ANISAGYSSQ YSFGSSGSST  180
VIDGLPDSPI YELSLSELFS EGKEGLGVGQ FEEAVQVAPK RNIGHSMENG WHFQAPKKES  240
DLDLQVGKRE DAIGVAFQSN AAHSDDENGP KRQKDPHRED LDLEDRQSNK LSAVYSDNVI  300
RTESFDKILL CSGNGRVFLD LQLEILQNGV QKSVQSGSVK GLQGSKARER KQGKREVVDL  360
RALLVHCAQA VAIDDTRGAN EILKQIRQLA SAYGDGTQRL ANYFADGLVA RLSGSGGKLF  420
TTLSTGLTSA AEILKAYQLL LVAHPYRKMS HFLTYQTVLN VAEKSTRLHI VDFGILYGFQ  480
WPSLIQCLAN RPGGPPMLRI TGIDFPQPGF RAAERIEETG RRLADYAKSF GVPFEYHAIA  540
TKWENLDVEE LSLRSDEVLV VNCMHRFNNL LDETVVLDSP RNIVLNKIRS MNPRVFIHGV  600
VNGAYKAPFF ITRFREALFH YSALFDAMET IVPRERPQRL LLEKELFGRE ILNVVACEGL  660
ERVERPETYK QWQVRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-49	367	662	25	310	Protein SCARECROW
5b3h_D	1e-49	367	662	25	310	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010262535.1	0.0	PREDICTED: scarecrow-like protein 14
TrEMBL	A3E2G2	0.0	A3E2G2_PINRA; SCARECROW-like protein 1
STRING	XP_010262535.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-157	GRAS family protein