PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00011325-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 27138.8 Da PI: 9.7062 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.7 | 4e-11 | 2 | 39 | 11 | 48 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ll ++v+ +G ++W+tIa g+ R++k+c++rw +yl PSME_00011325-RA 2 LLRKYVETHGVERWNTIALNAGLMRSGKSCRLRWMNYL 39 799*********************************97 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.4e-15 | 49 | 87 | 5 | 45 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w+ PSME_00011325-RA 49 SADEEELIIRLHKLLGNR-WSLIAGRVP-GRTDNEIKNYWN 87 89****************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.093 | 1 | 41 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 11.35 | 1 | 39 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-9 | 2 | 39 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-17 | 2 | 46 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.38E-23 | 2 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.69E-8 | 2 | 39 | No hit | No description |
PROSITE profile | PS51294 | 23.526 | 40 | 94 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-14 | 44 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-23 | 47 | 94 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-13 | 49 | 87 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.55E-12 | 49 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MLLRKYVETH GVERWNTIAL NAGLMRSGKS CRLRWMNYLR PNVKLGDISA DEEELIIRLH 60 KLLGNRWSLI AGRVPGRTDN EIKNYWNIHL SKKLETRHKI PISRRKRSRP LDCTDHENPM 120 SMQNSTNGNL DSRSADAAAT NTDQQLISSS RDSIPTPVNS REQAYSGPDL GDFCLCKATQ 180 VMSGLTEPSP LLTDEFINAK ISSPVVDRLK CRISGSRALT FEGEAQRTNI SGPSSAQSGV 240 YGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-20 | 7 | 96 | 22 | 110 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-45 | myb domain protein 5 |