PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011301-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 388aa    MW: 42903.1 Da    PI: 9.0295
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011301-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.41.2e-27179237259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ +++++ rsYYrC++a +Cpvkk+v+++aedp +v++tYegeH h+
  PSME_00011301-RA 179 SDGCRWRKYGQKSTRNNPYVRSYYRCAMAtSCPVKKQVQKCAEDPATVITTYEGEHIHP 237
                       7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-30167237IPR003657WRKY domain
SuperFamilySSF1182906.67E-25170238IPR003657WRKY domain
PROSITE profilePS5081125.694173239IPR003657WRKY domain
SMARTSM007744.8E-33178238IPR003657WRKY domain
PfamPF031062.0E-23180237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEAHKNKMNL LVTQINRLEE ENQKLNSKLK RMISNYDDLQ KQIRYHENQH LTRVNRSQIF  60
SPGHQIEDNF NFRVLSPRSV NIGSSGIVSH QSSDSHKRAA QEKNEKDTRF MDDQRLTSKK  120
RKINQLQLDQ FQNGMINSSL DESPNKKPQV LSNGSGKQTA TAPKRIVSVR TRSEASVVSD  180
GCRWRKYGQK STRNNPYVRS YYRCAMATSC PVKKQVQKCA EDPATVITTY EGEHIHPLSS  240
FAMATMHAAS SERAIAGEGM NIGNFVADNQ FMACNATISI STPFPTIILD LTGNRPNSGL  300
QLQPPHLAAG NFPPASNDFS QLLDHNTTGQ SSIMDSAEVS TTADPNFSAA LAVAIAGSML  360
NLCAAVQGMP DFRHGTQCSD GSNHEAFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-19169240878Probable WRKY transcription factor 4
2lex_A2e-19169240878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121QRLTSKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK91e-118A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-33WRKY family protein