PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00011298-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 19329.2 Da PI: 8.7797 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.1 | 8.1e-40 | 18 | 117 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C+++C+++pyf +p+kfa+vhk+FGasnv+k+l ++pe++r da++slvyeA ar+rdPvyG++g+i l++q++ l+ae PSME_00011298-RA 18 PCAACKLLRRRCSQECPFSPYFSPLEPQKFAYVHKVFGASNVSKMLMEVPESQRADAANSLVYEASARLRDPVYGSTGTIYLLERQVQVLRAE 110 7******************************************************************************************** PP DUF260 94 lallkee 100 l++l++e PSME_00011298-RA 111 LNALRAE 117 **99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.793 | 17 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-39 | 18 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MACRPMLGSP AALNTITPCA ACKLLRRRCS QECPFSPYFS PLEPQKFAYV HKVFGASNVS 60 KMLMEVPESQ RADAANSLVY EASARLRDPV YGSTGTIYLL ERQVQVLRAE LNALRAEIMR 120 YKYRDRVLQP PMLGVNDVNS DECKATNLTT GTVNSVDHTV KEQYYSTMNH SR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-42 | 9 | 121 | 2 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-42 | 9 | 121 | 2 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021684825.1 | 7e-70 | LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 2e-60 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A1Q3B3W3 | 2e-68 | A0A1Q3B3W3_CEPFO; DUF260 domain-containing protein | ||||
STRING | VIT_13s0067g02380.t01 | 6e-69 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 6e-63 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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