PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011237-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 204aa    MW: 22753.7 Da    PI: 10.4944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011237-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-08143191348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       +WT  E  +lvd+v  +G g+W+ I +        Rt  ++k++w+++l
  PSME_00011237-RA 143 SWTLHEVVKLVDGVSHFGVGRWSDIKKLAFsssGYRTSVDLKDKWRNLL 191
                       7***************************9999999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.198136195IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-12138196IPR009057Homeodomain-like
SMARTSM007173.5E-8140193IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-16142196IPR009057Homeodomain-like
CDDcd116607.59E-19142192No hitNo description
PfamPF002496.1E-6143191IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
KNKSSGRAAN LVRKELRVQP AQFSGDSADM KQIVPFGSSQ KVDLQKNKSS GRDANVVKQA  60
QCVQAGHYGG DIANMKQIVP FGSSQNVVHD SKEIKEQALV SVPPDRNYIL EPSNSDSVDD  120
ISYDYLKTIR TAKGGIRRKH HRSWTLHEVV KLVDGVSHFG VGRWSDIKKL AFSSSGYRTS  180
VDLKDKWRNL LRASYAQLQT NKQV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1110410.0BT111041.1 Picea glauca clone GQ03231_M08 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020526470.12e-42uncharacterized protein LOC18422773 isoform X2
TrEMBLW1NHA96e-41W1NHA9_AMBTC; Uncharacterized protein
STRINGERM948611e-41(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.27e-29TRF-like 6