PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011154-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 2086aa    MW: 230278 Da    PI: 6.4532
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011154-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.6e-07686727346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +WT+eE ++++d + ++ ++ + +Ia+ +  ++t  +c+++++ 
  PSME_00011154-RA 686 PWTPEEKKIFLDTFFLYNKN-FQKIASFIE-HKTVADCIEFYYR 727
                       8****************988.*********.**********985 PP
2Myb_DNA-binding25.82.5e-08856898347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WT  E +l+v a  ++G++ +k +++++  +++++qck ++ k 
  PSME_00011154-RA 856 QWTDHERQLFVAALGMFGKD-FKNVSQHIA-TKSEEQCKAFFSKT 898
                       6*****************99.*********.********999876 PP
3Myb_DNA-binding31.73.6e-1011871228346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46  
                        +WT++E e++vd ++++G + W++  + ++  ++  q+k ++q+
  PSME_00011154-RA 1187 SWTQDEKEKFVDIIRKHGRD-WTLLQESLP-AKSMTQIKTYFQN 1228
                        6*****************77.*********.************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.0E-13670733IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-4678730IPR009057Homeodomain-like
PROSITE profilePS5129315.796682733IPR017884SANT domain
SMARTSM007171.2E-7683731IPR001005SANT/Myb domain
PROSITE profilePS5129317.342852903IPR017884SANT domain
SMARTSM007171.8E-7853901IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-9855906IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-4856900IPR009057Homeodomain-like
PfamPF002493.1E-6856897IPR001005SANT/Myb domain
CDDcd001679.48E-6857895No hitNo description
Gene3DG3DSA:1.10.10.601.2E-711801229IPR009057Homeodomain-like
SuperFamilySSF466892.76E-1011801233IPR009057Homeodomain-like
PROSITE profilePS5129310.10911831234IPR017884SANT domain
SMARTSM007172.5E-811841232IPR001005SANT/Myb domain
CDDcd001674.36E-711871230No hitNo description
PfamPF002491.8E-811871228IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 2086 aa     Download sequence    Send to blast
MDYRDKIWGR SEILKRTGSS GYEAATALNA HKDMVGRREQ DGYGGSGDST GSSSYLIRSY  60
PEWRQSDRIA SSALPLRTHA SNNGYLKESA AREHGLSDFL GSYSSNWHSP LSSPVNNTVD  120
GGRDDGSQSS PRKRPRLGWG QGLAKYEKKL TGGAEDSLAT KGRASSCSDE ILLSHSDSPH  180
HGTGHGQEAL STKVVADGSG GTCIEVDKDD PAIQMDQAEG PCTGDGTERN GEFGSMPASE  240
IVGLDSCKSS DNTCLAKQCE NTETSIQMQP QTVLPGKFGS EDAPGRSKAN ILQRLEKLEL  300
ELDLTEKEFA KLEVQPEVHF SSNVSAKNDS MVDVAKNSVA EFQPDAHTLG QKDGVGEVIY  360
TTEVREPGKV VIDDQIGMPS SRIHESSLCL HSKADSKLQS SFRVHSFLSY DSLPTAFVTC  420
KGEDGIIQAD GFISQRISLK GSSQSAASFS DPEEMTGVTD SKEVKAENLI ESAGGQFSNI  480
TLKPGILMKK ETSECWKDVY NENRKQAECA SQALANLLPD AKIELKDMLT EEKSRESKER  540
IKQQLQDMLL KKKMFCRFRE QVLALKYRAL RETWKHEQAG LCQWSDRAES FKKCDIDRRN  600
GTLTPNQRTS HRLRLSGTAK VDAASDEVHT MHKLLAEPLS GYQRPHLKMP CQILDEKERS  660
IQRFISNNAL IEDPVAFEQE RKTINPWTPE EKKIFLDTFF LYNKNFQKIA SFIEHKTVAD  720
CIEFYYRNHK SEEFKMVRRR QRLKNRRDYS LPSTYLATTT TPNNRQRELA AISVDNLPDP  780
ASVTLYSHNS GISYSRLNKN VNNNQSVSVV SSNFDNPPGN AGFVTERNVS TEHSNKVKAI  840
QSPRPLTTIT EEFDSQWTDH ERQLFVAALG MFGKDFKNVS QHIATKSEEQ CKAFFSKTRK  900
RLGLDQVLET FQMSMHECSE HQVGGETEDL KTAASLENSK CRDMGGGQDD VKDVNGTNVG  960
KCLPLDCDAI VRIVSANSTE EPLVTESKVS GKGDVKQNIE DGRSIASITV LKDDLPENSQ  1020
KKALRDGIEE ITENALEVIP PSFPKSLSRP KNEEADYPVI TTDLVAEPET DCGCVEDTKD  1080
QQKAYADEQN PNTPHSKSGI EDETNESASV VDAFEKPAVE EKDLQPDTIS QIRQESPDAT  1140
HISHSSTNQA SVTHISTNAS IVAPAAQPKA RGNINTGESK PRREATSWTQ DEKEKFVDII  1200
RKHGRDWTLL QESLPAKSMT QIKTYFQNSK AKLGFTAGEG TNSRSAANRK HKVDDSDSIN  1260
TLYHLAHHKA ASDESGLKSD QIVNGSISTM LGVQGSDGLS FTLFGKGKWQ AEDPTALSGM  1320
EKVFQQMCSN GYTQQSVSSN GVFPLFQQSA LPVLTTSGFQ PPQNLIMQQS LSHSTPSKPQ  1380
LAAPQQTQQI ASVQQSQTSS ALCNLQTQAV NQIKQQQKPS QVISHCQQDY QNQGNRQLQK  1440
WILQQQEVQN FQHNISVLQQ QQPPQPQVII QQQNQPQHLS QSSHHAQHAL KQNIHYLSQQ  1500
QTFGQLAAVA SQQLSSNHQK VMNQHHLPSQ QQLMNQHQLH YDDQPKQCHL VQSNQLSQQQ  1560
QQQHSMLGSL QEQLVLQFHH HQQNLQSEKQ QPIWTNLPIH MLDNSEVSHH QQVQTPDILS  1620
EKEKKQRQEL HNCQSVSLHK GATQVIIKDA SNLPDSIEPK HIPMSQQHES GHSQDSQVNV  1680
QVLAHSLSKP VAFAESHQTR AGDVKLFGQV LLSQPTSCMN VSPSPSENVF LQPAFSMSSV  1740
PASTLVVSVS EGFPDAYPDG TPCVSSSLGR IGPSFTQGHS YSLPWQSASA VSFGGRNNLQ  1800
DARQLACLVR RADSENDMQN GQVALSRVAR LQHDAKEWDN SCPEGAPPSQ KIEGCEKLKR  1860
LQDNQNVGTG LGIKRSIDKG NGLVLSGDLS ASNSDLKSDM PQVDDMSSMM SRNRDPDLSS  1920
TVGAMLGVPV NSSQALPVTV IDAHLAIADW HSSRELCFAG SHSSKELYQS QDFPGNNVCH  1980
AIDAGKLVIT NNQPLALARS FAGGVENPQF TRENSFFGQQ AILHGSGNVG LNMSTWNSGM  2040
SVGSGNELQR VNMPTVSSVW AHGSMIVESQ PRTMDSRDAD DSKRNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C3e-15641735194NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D3e-15641735194NUCLEAR RECEPTOR COREPRESSOR 2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1086820.0BT108682.1 Picea glauca clone GQ03125_F03 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.14e-38MYB family protein