PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00011047-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 114aa MW: 13491.3 Da PI: 5.7223

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00011047-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	84.4	2.2e-26	24	113	2	92
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrF Pt+eel+++yLkk v++++ l+++++i+++d+y+++Pw+Lp ++ +e+ w+fF++r y++ + +nr+t sgyWkatg+d++v PSME_00011047-RA 24 LPGFRFYPTEEELLDFYLKKTVHDDHqLNFDRIIPTLDLYRYDPWELPGLANVGERPWFFFVPR--YYSKCSWPNRMTVSGYWKATGSDRAV 113 59*****************998885788788***********8788899***97..566789***************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-27	21	113	IPR003441	NAC domain
PROSITE profile	PS51005	30.327	23	114	IPR003441	NAC domain
Pfam	PF02365	6.6E-14	25	110	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MAAILAETYN TGDVLQGQRE LMSLPGFRFY PTEEELLDFY LKKTVHDDHQ LNFDRIIPTL 60 DLYRYDPWEL PGLANVGERP WFFFVPRYYS KCSWPNRMTV SGYWKATGSD RAVR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-22	25	113	19	107	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-22	25	113	19	107	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-22	25	113	19	107	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-22	25	113	19	107	NO APICAL MERISTEM PROTEIN
3swm_A	1e-22	25	113	22	110	NAC domain-containing protein 19
3swm_B	1e-22	25	113	22	110	NAC domain-containing protein 19
3swm_C	1e-22	25	113	22	110	NAC domain-containing protein 19
3swm_D	1e-22	25	113	22	110	NAC domain-containing protein 19
3swp_A	1e-22	25	113	22	110	NAC domain-containing protein 19
3swp_B	1e-22	25	113	22	110	NAC domain-containing protein 19
3swp_C	1e-22	25	113	22	110	NAC domain-containing protein 19
3swp_D	1e-22	25	113	22	110	NAC domain-containing protein 19
4dul_A	1e-22	25	113	19	107	NAC domain-containing protein 19
4dul_B	1e-22	25	113	19	107	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791987.1	4e-36	NAC domain-containing protein 22-like
Swissprot	Q10S65	4e-32	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A075M5N5	4e-40	A0A075M5N5_9SPER; NAC domain protein
STRING	XP_008791987.1	2e-35	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-33	NAC domain containing protein 35

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]