PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00010958-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 387aa    MW: 43095.2 Da    PI: 7.1178
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00010958-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd+ l+ ++++ G g+W++ ++  g+ R++k+c++rw +yl
  PSME_00010958-RA 14 RGPWTPEEDQTLISYIQKKGHGSWRALPKLAGLLRCGKSCRLRWTNYL 61
                      89******************************99************97 PP
2Myb_DNA-binding49.59.5e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T eE+  +++++  lG++ W++Ia+ ++ gRt++++k++w+++l
  PSME_00010958-RA  67 RGSFTREEERTILQLHGILGNR-WSSIASQLP-GRTDNEIKNFWNTHL 112
                       899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-23564IPR009057Homeodomain-like
PROSITE profilePS5129415.479961IPR017930Myb domain
SuperFamilySSF466895.64E-2911108IPR009057Homeodomain-like
SMARTSM007171.2E-121363IPR001005SANT/Myb domain
PfamPF002498.7E-161461IPR001005SANT/Myb domain
CDDcd001675.91E-101661No hitNo description
PROSITE profilePS5129425.16262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2565116IPR009057Homeodomain-like
SMARTSM007173.2E-1666114IPR001005SANT/Myb domain
PfamPF002491.7E-1467112IPR001005SANT/Myb domain
CDDcd001673.27E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGRAPCCEKT GLKRGPWTPE EDQTLISYIQ KKGHGSWRAL PKLAGLLRCG KSCRLRWTNY  60
LRSDIKRGSF TREEERTILQ LHGILGNRWS SIASQLPGRT DNEIKNFWNT HLKKRLLKMG  120
LDPSTHAPKS EANPSCPEGY EAMALTRHKA QWENARLEAE ARLSRESLLM SSNSAAGYHT  180
TNALENITMA SNNSPTDFFL KIWNSEAGKA FRKDPSCRII NNSCDNLCNV VDKNHPNGRG  240
YDQILSSDIT KNPRSSASIS SSSFASTQNS CDQSLNLNDK DMVNPALADW IGDCIVQTPE  300
VLSCFADMTV GQTGHKAHEN LVSEQVHYKG ISELHLDNDN GSGNIGCMIT ELSTSFPQQF  360
AWPWPDLHLE DDNDCWSNVS VIASAHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
1h8a_C2e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1186101e-174BT118610.1 Picea glauca clone GQ04008_C24 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255443.18e-97PREDICTED: transcription factor MYB3-like
SwissprotQ9M2D98e-94MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A222UAM71e-122A0A222UAM7_GINBI; R2R3MYB15
STRINGXP_010255443.13e-96(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-95myb domain protein 17