PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00010957-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 355aa MW: 40167.8 Da PI: 7.8676 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 7.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +lv+++++ G g+W++ ++ g+ R++k+c++rw +yl PSME_00010957-RA 14 KGPWTLEEDRILVHYIQKNGHGSWRALPKLAGLLRCEKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.8e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+ +++++ lG++ W+tIa+ ++ gRt++++k++w+++l PSME_00010957-RA 67 RGSFTREEERTIIQLHGVLGNR-WSTIASQLP-GRTDNEIKNFWNTHL 112 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 8 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.074 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.02E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.069 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.35E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MGRTPDREKT GLKKGPWTLE EDRILVHYIQ KNGHGSWRAL PKLAGLLRCE KSCRLRWTNY 60 LKPDIKRGSF TREEERTIIQ LHGVLGNRWS TIASQLPGRT DNEIKNFWNT HLKKRLLKMG 120 IDPSTHAPKS EANPTASQGN EVVALTRHKA QWENARLEAE ARLSRESLLM SANSSAGHHT 180 NNTVEMITIP SCNNPPTDYF LKMWNSEAGK VFRKKSRSRI FSQSYDSSCN VFVQNQPNGS 240 QKCNSASAEW TGDCNVKTPE SLSSFGEMVM GQTEHQAPED SSSSEKLGPA HVHYTGFSEL 300 LLDFPDSNNN NIDSAITELS TSFQQQSSWP WPELYLEDHD KDCWSNLSFI AFAHT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017980167.1 | 5e-97 | PREDICTED: transcription repressor MYB6 isoform X1 | ||||
Refseq | XP_021280626.1 | 5e-97 | transcription factor MYB41 | ||||
Swissprot | Q9M2D9 | 2e-88 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | A0A222UAM7 | 1e-115 | A0A222UAM7_GINBI; R2R3MYB15 | ||||
STRING | EOX96013 | 2e-96 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 8e-91 | myb domain protein 17 |