PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00010776-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 350aa    MW: 39179.9 Da    PI: 7.8213
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00010776-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.4e-131461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed +l + ++ +G g W++ +++ g++R +k+c++rw +yl
  PSME_00010776-RA 14 RGAWTKMEDVILSEFIRIHGDGAWSSLPKKAGLNRGGKSCRLRWTNYL 61
                      89********************************************97 PP
2Myb_DNA-binding51.13e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00010776-RA  67 RGNISVDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                       788999****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-19564IPR009057Homeodomain-like
PROSITE profilePS5129413.793961IPR017930Myb domain
SuperFamilySSF466893.02E-2512108IPR009057Homeodomain-like
SMARTSM007178.9E-111363IPR001005SANT/Myb domain
PfamPF002491.3E-111461IPR001005SANT/Myb domain
CDDcd001675.92E-81661No hitNo description
PROSITE profilePS5129424.84562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-2465117IPR009057Homeodomain-like
SMARTSM007174.9E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1467112IPR001005SANT/Myb domain
CDDcd001671.38E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MVRSPCCSKE GLNRGAWTKM EDVILSEFIR IHGDGAWSSL PKKAGLNRGG KSCRLRWTNY  60
LRTDIKRGNI SVDEEELIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLWSMN  120
ESQPNSSTQN LKRESKSPSP LQNHVLKTIP AKKTTAVRLS GMVKPDRRNG NGRGNCSFGH  180
NSKLWNGQET ANLFKPWSDL VKDSITQDDS LPTASGIADA NLVKSAEAGN SACSILSSLA  240
NERSPHSNYF ARDTATLAEG LLELKRLSTP DCNLLSYPSD CLTDFGLEEF YKEPATFSAE  300
TNEFKESNMQ SVNSFPVADH QGIEADFYNI DPEHVADWIH EFDYVQKSSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1167521e-105BT116752.1 Picea glauca clone GQ03806_A01 mRNA sequence.
GenBankKU1312191e-105KU131219.1 Picea abies transcription factor MYB30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9011e-128A0A167V901_PICAB; Transcription factor MYB30
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-54myb domain protein 3