PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00010773-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 355aa    MW: 40145.2 Da    PI: 8.1505
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00010773-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-141461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed +l + ++ +G g W++ +++ g++R++k+c++rw +yl
  PSME_00010773-RA 14 RGAWTKMEDVILSEFIRIHGDGGWTSLPKKAGLNRCGKSCRLRWTNYL 61
                      89********************************************97 PP

2Myb_DNA-binding51.13.1e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00010773-RA  67 RGNISVDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                       788999****************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-20564IPR009057Homeodomain-like
PROSITE profilePS5129414.527961IPR017930Myb domain
SuperFamilySSF466895.74E-2612108IPR009057Homeodomain-like
SMARTSM007173.2E-111363IPR001005SANT/Myb domain
PfamPF002496.9E-131461IPR001005SANT/Myb domain
CDDcd001672.14E-81661No hitNo description
PROSITE profilePS5129424.84562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-2465116IPR009057Homeodomain-like
SMARTSM007174.9E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1467112IPR001005SANT/Myb domain
CDDcd001671.43E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTKM EDVILSEFIR IHGDGGWTSL PKKAGLNRCG KSCRLRWTNY  60
LRTDIKRGNI SVDEEELIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLRSIK  120
ESQPNSSTQN LNRGSKSPSP LQNHVFKTIP VKITTAVRRS GMVRPDRCNG NGRGNCSLGQ  180
NIKLWNGQET ANLLKPRSHL LVKDSITQDD FLPAAFGIAD ANLVKSAEAG NSACSIFSSL  240
ANERSPHSNY FVRDTATLAE SLLELKRLST PDCNLLSYPS YCLTDFGLEE FYKEPATFSA  300
ETNEFEEIRF EEGNMQRVNS FPVADHQEIE EIYNIDRDHV ADWIQEFDYV QKSSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-23121165108B-MYB
1h8a_C1e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458423.12e-69transcription factor MYB8
TrEMBLA0A167V9011e-140A0A167V901_PICAB; Transcription factor MYB30
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-57myb domain protein 3