PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00010773-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 355aa MW: 40145.2 Da PI: 8.1505 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.6e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed +l + ++ +G g W++ +++ g++R++k+c++rw +yl PSME_00010773-RA 14 RGAWTKMEDVILSEFIRIHGDGGWTSLPKKAGLNRCGKSCRLRWTNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.1e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l PSME_00010773-RA 67 RGNISVDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 788999****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-20 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.527 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.74E-26 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.14E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.845 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.43E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MGRSPCCSKE GLNRGAWTKM EDVILSEFIR IHGDGGWTSL PKKAGLNRCG KSCRLRWTNY 60 LRTDIKRGNI SVDEEELIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLRSIK 120 ESQPNSSTQN LNRGSKSPSP LQNHVFKTIP VKITTAVRRS GMVRPDRCNG NGRGNCSLGQ 180 NIKLWNGQET ANLLKPRSHL LVKDSITQDD FLPAAFGIAD ANLVKSAEAG NSACSIFSSL 240 ANERSPHSNY FVRDTATLAE SLLELKRLST PDCNLLSYPS YCLTDFGLEE FYKEPATFSA 300 ETNEFEEIRF EEGNMQRVNS FPVADHQEIE EIYNIDRDHV ADWIQEFDYV QKSSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-23 | 12 | 116 | 5 | 108 | B-MYB |
1h8a_C | 1e-22 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013458423.1 | 2e-69 | transcription factor MYB8 | ||||
TrEMBL | A0A167V901 | 1e-140 | A0A167V901_PICAB; Transcription factor MYB30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 4e-57 | myb domain protein 3 |