PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00010642-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 549aa    MW: 61831.8 Da    PI: 8.3311
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00010642-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-16172217147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg W + Ed +l+++v q+G+ +W++Ia+++  gR++k+c++rw++ 
  PSME_00010642-RA 172 RGHWRPAEDAKLKELVSQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 217
                       899*****************************.***********996 PP
2Myb_DNA-binding52.61e-16224267146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r ++++e++e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  PSME_00010642-RA 224 RRPFSEEDEEKLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 267
                       679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.14167218IPR017930Myb domain
SMARTSM007171.9E-14171220IPR001005SANT/Myb domain
PfamPF002491.2E-15172217IPR001005SANT/Myb domain
SuperFamilySSF466895.99E-28172265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-26173225IPR009057Homeodomain-like
CDDcd001678.31E-13175216No hitNo description
PROSITE profilePS5129425.682219273IPR017930Myb domain
SMARTSM007174.4E-15223271IPR001005SANT/Myb domain
PfamPF002492.0E-13224266IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-20226272IPR009057Homeodomain-like
CDDcd001671.37E-11226266No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MSDQRERGEG KGRINIEPRP RKLQVELEQK LGPLRLLGNM CHTQKDRPSR NWIRPENRLN  60
NPILMQNTRI STENRQFLVV GSSGFMQPGV ETESGNKNKE VMLMNNSTTN AIAGTHCDPK  120
NWTMAQMGSM ESSSGHHSAK VSSDNNMGNQ LGDSNEEVEN SVDGVQSRLC ARGHWRPAED  180
AKLKELVSQY GPQNWNLIAE KLEGRSGKSC RLRWFNQLDP RINRRPFSEE DEEKLLAAHR  240
LYGNKWAMIA RLFPGRTDNA VKNHWHVIMA RRYREQSSAF GRRKLPQVHR REKRVCTEEE  300
ETRTGSPNLW VDKFSSLKSA HDVILQRGSV CKSQILGENA SCVTVFGGSR VHDDERNRSF  360
DRLIPHRIGA AAIAHQQQQQ QQQQRSYISS FDAVQSRIFF EGSREMKMNN NYNKAVDLLG  420
GNVDNYHVLV SQMEGESSSP SQLTTDSCAA VSLLQGAFAS NSKRSSLVNT NFSLGHQQQQ  480
DVVQYCYSDS SASDQLSAVE VSYADNTSTA GNNNNLMATR SLVFEEEEAE NEFKRSNAGF  540
IDFLGVGTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-301722727107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1109030.0BT110903.1 Picea glauca clone GQ03229_J07 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A222UAB30.0A0A222UAB3_GINBI; R2R3MYB12
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.15e-70myb domain protein 117