PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00010618-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 290aa MW: 32208 Da PI: 6.5182 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.8 | 6.1e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l ++++ +G g W+ I+ g++R++k+c+ rw++yl PSME_00010618-RA 14 RGAWTKEEDIILSEYIRIHGDGpGWTNIPTNTGLKRSGKSCRMRWLNYL 62 89******************99*************************97 PP | |||||||
2 | Myb_DNA-binding | 49.7 | 8.2e-16 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+++++++lG++ W++Ia +++ Rt++++k++w++ PSME_00010618-RA 68 RGNISPDEEELIIRLHRLLGNR-WSLIAGRLP-SRTDNEIKNYWNTC 112 7899******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.058 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.41E-26 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-13 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-20 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.10E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.622 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-11 | 72 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGKSPCSSTE GFHRGAWTKE EDIILSEYIR IHGDGPGWTN IPTNTGLKRS GKSCRMRWLN 60 YLRPDIKRGN ISPDEEELII RLHRLLGNRW SLIAGRLPSR TDNEIKNYWN TCLSKKLRLS 120 MKQSAQTNSR MKTLNTTSKS CSPLSNDAVL FKTIPVKITT ASTVRPIGFN GYGSSNNRSS 180 NEAFKSFNVK ETTESNGFAT AVANLVEGGG TNSATCSQSS LADEESGPNC DHFAIDTATL 240 DDSLFEYLNE LSFPQGNLLF SPSDWPTDPG LEEFYRVAVA EMNEIEDVMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-22 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF677019 | 8e-96 | EF677019.1 Picea sitchensis clone WS02760_D04 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541301.1 | 9e-64 | transcription factor MYB23 | ||||
Refseq | XP_028197056.1 | 9e-64 | transcription factor MYB23-like | ||||
Swissprot | Q38851 | 6e-53 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A167V911 | 1e-99 | A0A167V911_PICAB; Transcription factor MYB31 | ||||
STRING | GLYMA13G16890.1 | 3e-63 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 2e-47 | myb domain protein 6 |