PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00010618-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 290aa    MW: 32208 Da    PI: 6.5182
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00010618-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.86.1e-141462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd +l ++++ +G g  W+ I+   g++R++k+c+ rw++yl
  PSME_00010618-RA 14 RGAWTKEEDIILSEYIRIHGDGpGWTNIPTNTGLKRSGKSCRMRWLNYL 62
                      89******************99*************************97 PP

2Myb_DNA-binding49.78.2e-1668112147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ +++E+el+++++++lG++ W++Ia +++  Rt++++k++w++ 
  PSME_00010618-RA  68 RGNISPDEEELIIRLHRLLGNR-WSLIAGRLP-SRTDNEIKNYWNTC 112
                       7899******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.058962IPR017930Myb domain
SuperFamilySSF466898.41E-2612109IPR009057Homeodomain-like
SMARTSM007176.0E-111364IPR001005SANT/Myb domain
PfamPF002496.4E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-201569IPR009057Homeodomain-like
CDDcd001677.10E-91662No hitNo description
PROSITE profilePS5129425.62263117IPR017930Myb domain
SMARTSM007172.8E-1567115IPR001005SANT/Myb domain
PfamPF002492.3E-1468112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2470117IPR009057Homeodomain-like
CDDcd001671.27E-1172111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGKSPCSSTE GFHRGAWTKE EDIILSEYIR IHGDGPGWTN IPTNTGLKRS GKSCRMRWLN  60
YLRPDIKRGN ISPDEEELII RLHRLLGNRW SLIAGRLPSR TDNEIKNYWN TCLSKKLRLS  120
MKQSAQTNSR MKTLNTTSKS CSPLSNDAVL FKTIPVKITT ASTVRPIGFN GYGSSNNRSS  180
NEAFKSFNVK ETTESNGFAT AVANLVEGGG TNSATCSQSS LADEESGPNC DHFAIDTATL  240
DDSLFEYLNE LSFPQGNLLF SPSDWPTDPG LEEFYRVAVA EMNEIEDVMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22141177108B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6770198e-96EF677019.1 Picea sitchensis clone WS02760_D04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541301.19e-64transcription factor MYB23
RefseqXP_028197056.19e-64transcription factor MYB23-like
SwissprotQ388516e-53MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A167V9111e-99A0A167V911_PICAB; Transcription factor MYB31
STRINGGLYMA13G16890.13e-63(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-47myb domain protein 6