PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00010394-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 119aa MW: 13767.7 Da PI: 7.9687 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 43 | 1.4e-13 | 41 | 106 | 27 | 94 |
NAM 27 kleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ++++ + i +++y++ePw+Lp + ++ +w+fF+++++k+ r+nr tksgy katg+d+++++ PSME_00010394-RA 41 PFNF-DKIIPIELYQYEPWELPgLVRDVGDGQWFFFVPSHQKKC--VRPNRLTKSGYSKATGSDRKIHR 106 4555.567889***********444455788********99875..7********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.663 | 12 | 119 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-13 | 38 | 109 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MCAKKVCDDG AVQGELMHFP MPQQRSCWVL SEENDTISRL PFNFDKIIPI ELYQYEPWEL 60 PGLVRDVGDG QWFFFVPSHQ KKCVRPNRLT KSGYSKATGS DRKIHRPGLL PQWFSGSEH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008447882.1 | 1e-14 | PREDICTED: protein FEZ-like | ||||
Refseq | XP_008791987.1 | 9e-15 | NAC domain-containing protein 22-like | ||||
Refseq | XP_028793227.1 | 1e-14 | NAC domain-containing protein 35-like | ||||
Swissprot | Q9ZVP8 | 1e-13 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A075M5N5 | 2e-16 | A0A075M5N5_9SPER; NAC domain protein | ||||
STRING | XP_008447882.1 | 4e-14 | (Cucumis melo) | ||||
STRING | XP_008791987.1 | 3e-14 | (Phoenix dactylifera) | ||||
STRING | MLOC_37364.1 | 5e-14 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 4e-16 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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