PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00010370-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 292aa MW: 32504.1 Da PI: 6.3079 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.4 | 2.5e-11 | 13 | 44 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+eEd lv +v+++G g+W++I+++ g PSME_00010370-RA 13 KGPWTPEEDIALVSYVQEHGQGNWRLIPERTG 44 79**************************9877 PP | |||||||
2 | Myb_DNA-binding | 46.4 | 9.4e-15 | 48 | 92 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g +T+ Ed +++++ ++lG++ W++Ia++++ Rt++++k++w+++l PSME_00010370-RA 48 GHFTPYEDRIIIHLQALLGNR-WAAIASYLP-QRTDNDIKNHWNTHL 92 679******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.07E-22 | 10 | 88 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-11 | 11 | 42 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7 | 12 | 44 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-9 | 13 | 44 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-10 | 15 | 92 | No hit | No description |
PROSITE profile | PS51294 | 20.961 | 42 | 96 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-13 | 46 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 48 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 48 | 93 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MRSPSRDNAG MKKGPWTPEE DIALVSYVQE HGQGNWRLIP ERTGIKHGHF TPYEDRIIIH 60 LQALLGNRWA AIASYLPQRT DNDIKNHWNT HLKKMPTKLQ TQIAGNSLSG DSIRQSSFSS 120 DYYRRSKGQW ETKLQTDINH AKAALFEAIN IQGPSSSLQD SGITPESLCT QRTPNSSYAI 180 TLENVSKLLE GWKKSSPKET KPPSTRNLLE EKQCQSSQYS AEVPISYGSE IEGLQDAHNG 240 SLAWAVSVNC SPDYCDGAGG SLNNVDFCQM NSYPNTADSD LPFSGLENWL LD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-17 | 11 | 94 | 5 | 106 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D6R8Q9 | 2e-82 | A0A0D6R8Q9_ARACU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74650.1 | 1e-57 | myb domain protein 31 |