PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00010370-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 292aa    MW: 32504.1 Da    PI: 6.3079
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00010370-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.5e-111344132
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                      +g+WT+eEd  lv +v+++G g+W++I+++ g
  PSME_00010370-RA 13 KGPWTPEEDIALVSYVQEHGQGNWRLIPERTG 44
                      79**************************9877 PP

2Myb_DNA-binding46.49.4e-154892248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      g +T+ Ed +++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  PSME_00010370-RA 48 GHFTPYEDRIIIHLQALLGNR-WAAIASYLP-QRTDNDIKNHWNTHL 92
                      679******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-221088IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-111142IPR009057Homeodomain-like
SMARTSM007171.71244IPR001005SANT/Myb domain
PfamPF002491.5E-91344IPR001005SANT/Myb domain
CDDcd001671.16E-101592No hitNo description
PROSITE profilePS5129420.9614296IPR017930Myb domain
SMARTSM007171.8E-134694IPR001005SANT/Myb domain
PfamPF002491.3E-134892IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-204893IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MRSPSRDNAG MKKGPWTPEE DIALVSYVQE HGQGNWRLIP ERTGIKHGHF TPYEDRIIIH  60
LQALLGNRWA AIASYLPQRT DNDIKNHWNT HLKKMPTKLQ TQIAGNSLSG DSIRQSSFSS  120
DYYRRSKGQW ETKLQTDINH AKAALFEAIN IQGPSSSLQD SGITPESLCT QRTPNSSYAI  180
TLENVSKLLE GWKKSSPKET KPPSTRNLLE EKQCQSSQYS AEVPISYGSE IEGLQDAHNG  240
SLAWAVSVNC SPDYCDGAGG SLNNVDFCQM NSYPNTADSD LPFSGLENWL LD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1711945106B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R8Q92e-82A0A0D6R8Q9_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74650.11e-57myb domain protein 31