PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00010253-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 301aa    MW: 34450.3 Da    PI: 5.0547
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00010253-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.6e-132269148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT +Ed +l+++++++G g+W   a+  g  Rt+k+c++rw +yl
  PSME_00010253-RA 22 KGPWTLQEDMQLIRYIRLHGEGRWPFLAKAAGISRTGKSCRLRWINYL 69
                      79******************************99************97 PP
2Myb_DNA-binding45.91.3e-1475118146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r++ T+eE+ l++++  ++G++ W++Ia+ ++ gRt++++k++w +
  PSME_00010253-RA  75 RNKITPEEERLIIELQGRWGNR-WSRIAQNLP-GRTDNEIKNYWKT 118
                       6788******************.*********.***********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2311769IPR017930Myb domain
SuperFamilySSF466893.74E-2919116IPR009057Homeodomain-like
SMARTSM007175.7E-142171IPR001005SANT/Myb domain
PfamPF002491.1E-132269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-222376IPR009057Homeodomain-like
CDDcd001673.04E-102469No hitNo description
PROSITE profilePS5129423.69570124IPR017930Myb domain
SMARTSM007176.5E-1474122IPR001005SANT/Myb domain
PfamPF002493.3E-1375118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2277124IPR009057Homeodomain-like
CDDcd001671.12E-1079118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MALRSWLEFS TVKEVEETDR RKGPWTLQED MQLIRYIRLH GEGRWPFLAK AAGISRTGKS  60
CRLRWINYLR PDLKRNKITP EEERLIIELQ GRWGNRWSRI AQNLPGRTDN EIKNYWKTRS  120
KRKLNLQAES GRSGMDAHNE GLMGSDCLTT RLTGLESANP STSFAKQNIK EIAVRQTKKT  180
PYMREDMRDD ISPSSEEDYE HGLESEIRDN SSQIFNDDGQ QGAALQEHLE GSDELFENST  240
GLPYIFSVGS LVTMLSSELF ADHGATQDSS FMVDSPEGFS ESGSYSNCYS DVLWNMQDEG  300
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26191254109B-MYB
1gv2_A2e-26221244105MYB PROTO-ONCOGENE PROTEIN
1h88_C8e-262212458159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-262212458159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-26221244105C-Myb DNA-Binding Domain
1msf_C2e-26221244105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022774405.15e-53myb-related protein 305-like
STRINGGorai.006G030800.12e-51(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.16e-52myb domain protein 21