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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00010243-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | bHLH | ||||||||
| Protein Properties | Length: 285aa MW: 31385.7 Da PI: 8.2848 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 42.1 | 1.6e-13 | 98 | 142 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
Er RR ++Ns ++ L++llP + K++K i+ +A++YIk Lq
PSME_00010243-RA 98 TERARRTKMNSMLNALKSLLPIG---LHSKVDKGRIVDEAIDYIKTLQ 142
6*********************6...6********************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 13.167 | 90 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 4.97E-16 | 94 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.5E-15 | 95 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.13E-12 | 95 | 146 | No hit | No description |
| SMART | SM00353 | 1.5E-9 | 96 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 4.0E-11 | 98 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:3.30.70.260 | 8.2E-4 | 199 | 268 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 285 aa Download sequence Send to blast |
LKGACHFLSN TICKMFSVTP FCMMSEYRDS EDLYTIVSAY NTSTNSRSPE KQQSMVQSKA 60 NGRKRSWAGA KSPSLQGEDK SPASTKKTCL DNEIHIWTER ARRTKMNSML NALKSLLPIG 120 LHSKVDKGRI VDEAIDYIKT LQANLKDLQA QKSEMEAHHS RSSFSLTKSE NSHGLHIPPV 180 PVASSYPGLK ILGSNVVGSH AFITVWGPYK TGFLANLFSI LDANQLEIVS CTINTVGSNI 240 VYALHAMSQN NNEQVTTKAL SCTIDELNTM IADPQEEALP KACNE |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G49770.1 | 6e-16 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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