PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00010167-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 357aa    MW: 42046.9 Da    PI: 9.5963
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00010167-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-074262526
                      --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       C  f+r G+C++G+ C+F+H+
  PSME_00010167-RA 42 VCYAFQR-GECNRGSACRFSHD 62
                      699****.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.8213764IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-43963IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-44264IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-54262IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016607Cellular Componentnuclear speck
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDNLNGATII GRTVRVDHVA NYKKKKEEDE EEEQKKREER GVCYAFQRGE CNRGSACRFS  60
HDEQRNANTG WGGKDSGPRW RHDQYEHASQ GGQQSKPRDD SKGGEIKSRH GIQDEDNRSI  120
PSGKPSQRSK DVGNQDRHTS GHKEATSRED VRQPRYDEKR TSHNRLTDEK GGVSRHDENR  180
YMDKAPSRKN DHNRRGFGSG STDAAERDEE RRSRCHSRKD YDINKNDDRG EAKYVRLGSK  240
DADEKNEDKR SRDHSKRDYD RNEKDNGRRE AKFFGSGSRD IDERNEDKRS RHYSKRDYDR  300
NEKDNDRREA KYRSSGSRGS DERNEDKRSR DYSKIDYDRN EKDNDRREEK YSRRCAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1037980.0BT103798.1 Picea glauca clone GQ02802_F11 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R6X81e-66A0A0D6R6X8_ARACU; Uncharacterized protein