PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00010017-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 285aa    MW: 31890.3 Da    PI: 7.5417
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00010017-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.16.5e-29299193
            DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
                      +C++C+vlr++C+++Cvl+p++     +++q++++ +++k++G++ +++l+++ pe+ r+++++sl+yeA+ r+ +P++G+vg+++++++ ++q+
  PSME_00010017-RA  2 SCNGCRVLRKGCSESCVLRPCLhwistAESQANATIFLAKFYGRAGLTNLISNGPEHLRPAIFRSLLYEACGRIVNPIHGSVGLLWSGNWAVCQA 96
                      6*********************9999778899*************************************************************99 PP

            DUF260 91 kae 93
                       +e
  PSME_00010017-RA 97 GVE 99
                      776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2471107IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-23299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCVLR PCLHWISTAE SQANATIFLA KFYGRAGLTN LISNGPEHLR  60
PAIFRSLLYE ACGRIVNPIH GSVGLLWSGN WAVCQAGVEN ILRGSFPAVA PDSSGSHVVP  120
MGTMGRRERL RSVETKGKLK GMSHSKARRK KRERALLSNN MDSICKSDDE WDDVTNTLQK  180
AALEKGQFDE KYKFDEKYKE KCSTFFSGQE VDEFIGADHA RMEYCLDLCN VKTSQREVEA  240
PCNEVGLELT LGSHEYFPRT PDKTLGFDLR CSDAFWDQCV ENCLP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1009872e-99BT100987.1 Picea glauca clone GQ0062_D21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926047.13e-62LOB domain-containing protein 40
TrEMBLA0A0D6RB684e-63A0A0D6RB68_ARACU; Uncharacterized protein
STRINGXP_008797833.11e-59(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.12e-61LOB domain-containing protein 40