PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00009987-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 150aa MW: 16659.2 Da PI: 10.6908 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.2 | 1.7e-12 | 16 | 60 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+WT+ Ed+ l + + +G g+W+++++ g++R++k+c+ rw PSME_00009987-RA 16 RGPWTQGEDLCLTQFIGAHGEGCWSSVPKNTGLKRCGKSCRFRWV 60 89******************************************5 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ PSME_00009987-RA 69 RGNISPDEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEVKNYWNT 112 7899******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.225 | 11 | 63 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-9 | 15 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.4E-26 | 15 | 110 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-11 | 16 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-18 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.39E-7 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 23.837 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-15 | 69 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-23 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.42E-12 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
PGKGPETFQV AGGIDRGPWT QGEDLCLTQF IGAHGEGCWS SVPKNTGLKR CGKSCRFRWV 60 IYLRPSVKRG NISPDEEDLI IRLHKLLGNR WSLIAGRIPG RTDNEVKNYW NTRLNKKGHA 120 TGCIRLKSIK PRKPNISEPA VSLLTPTSAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 16 | 117 | 7 | 107 | B-MYB |
1h8a_C | 2e-24 | 14 | 117 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047392.1 | 7e-55 | PREDICTED: transcription factor WER | ||||
Swissprot | Q38850 | 2e-49 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A059CM76 | 2e-53 | A0A059CM76_EUCGR; Uncharacterized protein | ||||
STRING | XP_010047392.1 | 3e-54 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 7e-52 | myb domain protein 5 |
Publications ? help Back to Top | |||
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