PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009969-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 488aa    MW: 55748.2 Da    PI: 5.6609
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009969-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH491.1e-15285332355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++h + Er+RR+ +N+++++Lr+l+P++     +K + a+i+  A++YIk+Lq
  PSME_00009969-RA 285 ANHFATERQRREYLNEKYQKLRTLVPNP-----TKADRASIVGDAIDYIKELQ 332
                       68**************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-17279344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.037282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-13285332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-16285344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-12286336No hitNo description
SMARTSM003532.3E-13288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
DYAVQQFLQL LLGESRSWEV YNGPENLFST MYDDYFDPQP DCNMLPADLS SSSAIMGLEE  60
NLQRPLLRLP IFSPGENNFS DEAEMLGSDF QQHLNFELEQ EYNSQIIQDV LQQHNSLHQE  120
MCSSQQQPTN SSATASSWEA SFHEMQEITL FQQQQQQQQN ILHIQDQGHH ISSFTSSNAS  180
TSAYPAPELL ELLQLPRCSV PSSAISFSSN HPQLSFNPPQ PPLLRDMLHT LNSHNYQLNP  240
SRPYFGMDEK DAALQAEAEA GRQFTNSILD LKRDMSLSKG EARGANHFAT ERQRREYLNE  300
KYQKLRTLVP NPTKADRASI VGDAIDYIKE LQRTVKEMKT LVEQKKISGI GRSKRHKINH  360
DHVESSSQHE SVLQCGQDQK FLTDGSLRSS WLQRTSKEGT QVDVRIVDNE VNIKLIQRKR  420
RSCLLSVSLV LHELHLEILH ANGANIGEHY IFMFNTKIYE DSCEYARSIA TKLMDAVDRQ  480
LAYSIPNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416421QRKRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854151.11e-110transcription factor bHLH91
RefseqXP_020528932.11e-110transcription factor bHLH91
TrEMBLU5D5K51e-109U5D5K5_AMBTC; Uncharacterized protein
STRINGERN156181e-110(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.14e-53bHLH family protein