PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00009900-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 308aa MW: 35273.3 Da PI: 6.9091 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 140.1 | 1.3e-43 | 19 | 146 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrF Pt+eel+ +yLkk+++ + l+++++i+++d+y+++Pw+Lp +++a ++++w+fF++rd+k++ r+nr t sgyWkatg+d++v PSME_00009900-RA 19 PGFRFYPTEEELLGFYLKKRIQPGHgLNFDKIIPTLDLYQYDPWELPgLAHDAgDQQQWFFFVPRDRKKS-CPRPNRLTVSGYWKATGSDRAV 110 9********************98887999889***************5444442566**********986.58******************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + vglkk+Lvfykg+ap+g++tdW+m eyr+ PSME_00009900-RA 111 RNERLQCVGLKKILVFYKGKAPRGQRTDWIMMEYRM 146 **999*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-46 | 13 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.42 | 17 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-22 | 19 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MPDKIWSNRV VKEELMDLPG FRFYPTEEEL LGFYLKKRIQ PGHGLNFDKI IPTLDLYQYD 60 PWELPGLAHD AGDQQQWFFF VPRDRKKSCP RPNRLTVSGY WKATGSDRAV RNERLQCVGL 120 KKILVFYKGK APRGQRTDWI MMEYRMPDLS SSATKKKIDM VLCRIYRKAA ARKSLEQRTR 180 PNDADKEEPV VSSDEDEEKS ALNVSSQSNP MTEAAKVSSL SYLDHDDVCS SLSKKEDESS 240 IFDNLEPIMF CEDQETSVLK TPESCKPPQL ELPKLSMDFL FSQRIATPNA LLATPSPFQI 300 PHSSIPGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-42 | 19 | 171 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-42 | 19 | 171 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-42 | 19 | 171 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-42 | 19 | 171 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-42 | 19 | 171 | 22 | 171 | NAC domain-containing protein 19 |
3swm_B | 9e-42 | 19 | 171 | 22 | 171 | NAC domain-containing protein 19 |
3swm_C | 9e-42 | 19 | 171 | 22 | 171 | NAC domain-containing protein 19 |
3swm_D | 9e-42 | 19 | 171 | 22 | 171 | NAC domain-containing protein 19 |
3swp_A | 9e-42 | 19 | 171 | 22 | 171 | NAC domain-containing protein 19 |
3swp_B | 9e-42 | 19 | 171 | 22 | 171 | NAC domain-containing protein 19 |
3swp_C | 9e-42 | 19 | 171 | 22 | 171 | NAC domain-containing protein 19 |
3swp_D | 9e-42 | 19 | 171 | 22 | 171 | NAC domain-containing protein 19 |
4dul_A | 7e-42 | 19 | 171 | 19 | 168 | NAC domain-containing protein 19 |
4dul_B | 7e-42 | 19 | 171 | 19 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q10S65 | 4e-57 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A075M5N5 | 1e-119 | A0A075M5N5_9SPER; NAC domain protein | ||||
STRING | GSMUA_Achr11P01320_001 | 5e-60 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 9e-55 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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