PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009774-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family DBB
Protein Properties Length: 168aa    MW: 18608.9 Da    PI: 7.6637
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009774-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.31.5e-08434536
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                       C+ +e   +q+fC  ++  lC++C ++ H g
  PSME_00009774-RA  4 LCDSCEAAAAQFFCAADEAALCAQCDEKVH-G 34
                      7******99*******************99.5 PP
2zf-B_box17.39.8e-065486436
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                      ++C+ +e   + l+C  +++ lC +C +  H g
  PSME_00009774-RA 54 PRCDICETAAAFLHCSIDGSSLCLQCDTDVHVG 86
                      89******99******************99965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.1E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.751147IPR000315B-box-type zinc finger
PfamPF006431.3E-6342IPR000315B-box-type zinc finger
SMARTSM003363.0E-65196IPR000315B-box-type zinc finger
CDDcd000215.01E-45484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MRTLCDSCEA AAAQFFCAAD EAALCAQCDE KVHGCNKLAS RHVRLQLRES WSVPRCDICE  60
TAAAFLHCSI DGSSLCLQCD TDVHVGGKRT HVRYLLLGQR VELPNGNHLQ DEHGNPKTVD  120
TARPWQKKYG QEQLRNGDPS HKNNMAHGNI HNVASCKKEN VQSNGKKD
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6776281e-150EF677628.1 Picea sitchensis clone WS02772_A11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024517934.12e-55B-box zinc finger protein 18 isoform X3
RefseqXP_024540627.12e-55B-box zinc finger protein 18 isoform X3
SwissprotQ9SJU51e-49BBX18_ARATH; B-box zinc finger protein 18
TrEMBLA9NR037e-95A9NR03_PICSI; Uncharacterized protein
STRINGEFJ105488e-55(Selaginella moellendorffii)
STRINGEFJ192928e-55(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21320.12e-40DBB family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]