PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009748-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 407aa    MW: 45821.8 Da    PI: 6.2977
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009748-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11202248455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+L+
  PSME_00009748-RA 202 DHIVAERKRREKLSQKFIALSAIIPGL-----KKMDKASVLGDAIKYVKQLE 248
                       6999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.977198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-16201263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9202248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-17202260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-11203252No hitNo description
SMARTSM003536.6E-13204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEGMEDQDFS EPAEQLKALM GSKNNFVYES DASFTGYPSN IKLPVTADCQ LGVKSFGEYF  60
RSERPAKRSK PNNSRESHFR GQQRLASKDS TSPIIFRNDQ PTLQPEQIDK YFTNFVKLNG  120
HETYEIVAPT SPSIQPEVIA AGVHDPSCIS DINRSHMEAF NACLGQFFTT NNGPPDMRIP  180
SATVGNRYFN NLPNKTSGHT QDHIVAERKR REKLSQKFIA LSAIIPGLKK MDKASVLGDA  240
IKYVKQLEDR IKAMEEQVPK ITVQSVVHVK EELCSNRHQD DLDKVSSSSI DSSSDKAITE  300
VVLIPEIETR VVNRNVRIHV VCEKKKHLMV EFLAELERLQ LTVLNASILS FSESTFDLTF  360
NAKINASDLI DSSWCWFSQT VHVVFGPDWI ISVDRIATFF NVAEEVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-13202273878Transcription factor MYC2
5gnj_B3e-13202273878Transcription factor MYC2
5gnj_E3e-13202273878Transcription factor MYC2
5gnj_F3e-13202273878Transcription factor MYC2
5gnj_G3e-13202273878Transcription factor MYC2
5gnj_I3e-13202273878Transcription factor MYC2
5gnj_M3e-13202273878Transcription factor MYC2
5gnj_N3e-13202273878Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211ERKRRE
2207212RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-33bHLH family protein