PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00009501-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

G2-like

Protein Properties

Length: 478aa MW: 53685.6 Da PI: 5.7152

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00009501-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	50.1	6.3e-16	289	336	2	49
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh.vkSH 49 +++Wt ++H+rFv+aveqL G ++ +P++ lelmkv+gLt+++ +SH PSME_00009501-RA 289 LKVEWTMDMHRRFVQAVEQL-GVDQGIPSRTLELMKVDGLTRHNkYRSH 336 5899**************.******************98724555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.05E-7	286	337	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-14	286	336	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-13	288	336	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MMDFPKGLTV MVLDEDTEAA LETKSRLEGF EYVVSTFSSE TEALAVFANE TNSFHVALVE 60 AFSECGTVLL ESLKPIKATI LSIIHLGPEL ANVKSAQNED SYDGSKTEAS TLHEVQSCIP 120 IPTDSGGRSP SEEDKTLRLD DTTNFKAGTT HADNNCEYET IRELRLDVEA TLAWSSQVDS 180 PAFVKKETQD MYRISLKTRN STQCGLKSVD ITSDQLGNEI TSRVTINAPG IAEEEVGSAE 240 GSKSDDENIE KEAILSSYAY SSTEDIKGKK NNTEHDCKKS NIASSKKKLK VEWTMDMHRR 300 FVQAVEQLGV DQGIPSRTLE LMKVDGLTRH NKYRSHRRHI FPREDEVAIR RYWQHFILHG 360 LELSKMKLGV LHPTPHGTPM GQPLHVWGHP TIDQSRSHMW QQLPVGIPTT WQAQDGSFWK 420 HRGVCLDAWG FPKLGMPFYP QPMMPKEVID ESFKEALNNP WRALPLGLKP PSMESVIW

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MMDFPKGLTV MVLDEDTEAA LETKSRLEGF EYVVSTFSSE TEALAVFANE TNSFHVALVE  60
AFSECGTVLL ESLKPIKATI LSIIHLGPEL ANVKSAQNED SYDGSKTEAS TLHEVQSCIP  120
IPTDSGGRSP SEEDKTLRLD DTTNFKAGTT HADNNCEYET IRELRLDVEA TLAWSSQVDS  180
PAFVKKETQD MYRISLKTRN STQCGLKSVD ITSDQLGNEI TSRVTINAPG IAEEEVGSAE  240
GSKSDDENIE KEAILSSYAY SSTEDIKGKK NNTEHDCKKS NIASSKKKLK VEWTMDMHRR  300
FVQAVEQLGV DQGIPSRTLE LMKVDGLTRH NKYRSHRRHI FPREDEVAIR RYWQHFILHG  360
LELSKMKLGV LHPTPHGTPM GQPLHVWGHP TIDQSRSHMW QQLPVGIPTT WQAQDGSFWK  420
HRGVCLDAWG FPKLGMPFYP QPMMPKEVID ESFKEALNNP WRALPLGLKP PSMESVIW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT107884	6e-70	BT107884.1 Picea glauca clone GQ03113_O04 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	4e-29	GBF's pro-rich region-interacting factor 1