PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00009389-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 21193 Da PI: 5.5759 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137 | 6.7e-43 | 25 | 124 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C ++C+lapyfp+++ +kfa +h++FGasn++kll++lp e+r+da+ss+vyeA+ar+rdPvyG++g+++++q+ql+ql+++ PSME_00009389-RA 25 PCAACKMLRRRCGEKCMLAPYFPSNDLHKFATAHRIFGASNIIKLLQDLPAEQRTDAVSSMVYEANARLRDPVYGCAGIVFQMQSQLCQLQSQ 117 7******************************************************************************************** PP DUF260 94 lallkee 100 la++++e PSME_00009389-RA 118 LATAQAE 124 ***9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.502 | 24 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.3E-42 | 25 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MAPSHQSFSE NMQTVGSFRG HAPSPCAACK MLRRRCGEKC MLAPYFPSND LHKFATAHRI 60 FGASNIIKLL QDLPAEQRTD AVSSMVYEAN ARLRDPVYGC AGIVFQMQSQ LCQLQSQLAT 120 AQAEILTMRL QQANLLALVA GSSHADNAET TRPVSPSSSA LSQESDDQQN DLIYFEGEDP 180 LQLWDVSVWK EL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-38 | 24 | 126 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-38 | 24 | 126 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF084557 | 0.0 | EF084557.1 Picea sitchensis clone WS0271_N08 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009409552.1 | 9e-61 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 5e-55 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A9NTB0 | 1e-103 | A9NTB0_PICSI; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P15500_001 | 3e-60 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-48 | LOB domain-containing protein 1 |